BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0227300 Os03g0227300|AK072579
(421 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52050.3 | chr3:19305159-19309398 FORWARD LENGTH=449 471 e-133
AT1G34380.2 | chr1:12552839-12554299 REVERSE LENGTH=348 78 1e-14
>AT3G52050.3 | chr3:19305159-19309398 FORWARD LENGTH=449
Length = 448
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/336 (68%), Positives = 286/336 (85%), Gaps = 1/336 (0%)
Query: 86 ADPSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLVLDMLEFI 145
A S R+ML+DGTS++YR+YYK+LA+L HG L HADGN DWVLTIF +LSL++D+L+F+
Sbjct: 112 AASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFL 171
Query: 146 PSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPSYKSNRIPTPDTIVQGMQYL 205
PSH AVVFDHDGVPYG T+ S AKGM FRH LYP+YKSNR PTPDTIVQG+QYL
Sbjct: 172 PSHVAVVFDHDGVPYG-TTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYL 230
Query: 206 KASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRIA 265
KASIKAMSIKVIEVPGVEADDVIGTLA+ S+SAG+KVR+VSPDKDFFQILSPSLRLLR+
Sbjct: 231 KASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLT 290
Query: 266 PRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKFGS 325
PRGS M SFG+EDF K++G L+P+QFVD++AL+GDK+DNIPGV+GIG+++AV+LI++FG+
Sbjct: 291 PRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGT 350
Query: 326 LENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKPKDD 385
LENLL+SVDE++E +IK++LI+ ++QA+L K LA LRSDLP Y+VPF T DL F+KP+D+
Sbjct: 351 LENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDN 410
Query: 386 GAKFIKLLRALEAYAEGSSADLIIRRAAYLWNKLNS 421
G K LL A+ YAEG SAD +IRRA LW KL +
Sbjct: 411 GEKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEA 446
>AT1G34380.2 | chr1:12552839-12554299 REVERSE LENGTH=348
Length = 347
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 9/165 (5%)
Query: 175 KGMTFRHMLYPSYKSNRIPTPDT---IVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTL 231
+G R L PSYK++R +P+ + Q++ ++ ++ V+ + G EADDV+ TL
Sbjct: 120 EGNQRRRELLPSYKAHR-KSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEADDVVATL 178
Query: 232 AVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMVSFGVEDFVKRYGALKPSQF 291
+V GY+ I SPDKDF Q++S +++++ + ++ + +Y P
Sbjct: 179 MEQAVQRGYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNC-DPQSD 237
Query: 292 VDVVALSGDKADNIPGVE----GIGDINAVKLITKFGSLENLLKS 332
+ + GD+ D +PG++ G A+KL+ K GSLE+LL +
Sbjct: 238 LSFRCIMGDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSLESLLSA 282
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,841,446
Number of extensions: 303472
Number of successful extensions: 703
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 320
Effective length of database: 8,337,553
Effective search space: 2668016960
Effective search space used: 2668016960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)