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Os03g0225500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nup133 nucleoporin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.93 (0.0189) R2 : 0.843
β1 : 1.8 (0.0692) R2dD : 0.242 R2D : 0.168
β2 : 1.12 (0.0609) R2dC : 0.186 R2C : 0.402
β3 : -1.17 (0.0598) R2dE : 0.213 R2E : 0.413
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.457 (0.0405) R2dN8 : 0.0591 R2N8 : -0.0176
σ : 0.353
deviance : 57.41
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_____
C
peak time of C : 16.1
E
wheather : wind
threshold : 4.3
memory length : 293
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.91
open length of G : 2.53

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.55 0.356 9.93 1.79 1.13 -1.17 -0.0703 -0.0865 0.458 16.2 4.242 283 2.93 2.58
57.42 0.353 9.93 1.8 1.12 -1.17 -0.026 -- 0.457 16.1 4.632 293 2.91 2.55
57.5 0.353 9.93 1.8 1.12 -1.17 -- -0.025 0.459 16.1 4.7 288 2.9 2.58
57.41 0.353 9.93 1.8 1.12 -1.17 -- -- 0.457 16.1 4.3 293 2.91 2.53
87.69 0.436 9.89 1.71 -- -1.77 -- -0.3 0.49 -- 29.28 365 1.35 3.45
92.65 0.451 9.97 1.74 1.94 -- 0.118 -- 0.376 17 -- -- -- --
92.69 0.451 9.96 1.74 1.94 -- -- -- 0.377 17 -- -- -- --
85.62 0.431 9.9 1.71 -- -1.83 -- -- 0.514 -- 17.85 374 0.758 4.34
142.28 0.556 9.97 -- 1.12 -1.13 -- -- 0.277 16.1 5.2 294 2.98 2.55
290.97 0.797 9.94 1.67 -- -- -- -- 0.327 -- -- -- -- --
172.47 0.614 10 -- 1.91 -- -- -- 0.183 17 -- -- -- --
168.9 0.605 9.95 -- -- -1.75 -- -- 0.303 -- 20.49 395 0.359 4.8
364.49 0.891 9.99 -- -- -- -- -- 0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.24 wind 5.0 270 < th dose independent rect. 3 3
3 59.79 wind 5.0 270 < th dose independent rect. 2 5
4 60.22 precipitation 0.1 270 < th dose independent rect. 3 3
5 60.22 precipitation 0.1 270 < th dose dependent rect. 3 3
10 60.65 wind 9.0 270 < th dose independent rect. 6 21
11 60.83 wind 9.0 270 < th dose dependent rect. 3 3
14 61.11 precipitation 0.1 270 < th dose independent rect. 2 5
15 61.11 precipitation 0.1 270 < th dose dependent rect. 2 5
22 61.41 wind 9.0 270 < th dose independent rect. 7 19
25 61.49 temperature 10.0 270 > th dose dependent rect. 3 3
28 61.51 temperature 10.0 270 > th dose independent rect. 3 3
30 61.51 temperature 30.0 270 < th dose independent rect. 3 3
31 61.51 humidity 50.0 270 > th dose independent rect. 3 3
34 61.51 atmosphere 995.0 270 > th dose independent rect. 3 3
35 61.51 atmosphere 1015.0 270 < th dose independent rect. 3 3
36 61.51 radiation 20.0 270 < th dose independent rect. 3 3
39 61.51 temperature 10.0 270 > th dose independent rect. 6 21
40 61.53 wind 9.0 270 < th dose dependent rect. 2 5
42 61.58 wind 9.0 270 < th dose dependent rect. 4 1
45 61.71 temperature 10.0 90 > th dose dependent rect. 3 5
46 61.77 radiation 40.0 270 < th dose dependent rect. 3 3
75 62.00 radiation 1.0 270 < th dose dependent rect. 3 2
83 62.11 radiation 1.0 270 < th dose independent rect. 3 2
86 62.13 temperature 10.0 270 > th dose independent rect. 2 5
88 62.13 temperature 30.0 270 < th dose independent rect. 2 5
89 62.13 humidity 50.0 270 > th dose independent rect. 2 5
91 62.13 atmosphere 995.0 270 > th dose independent rect. 2 5
92 62.13 atmosphere 1015.0 270 < th dose independent rect. 2 5
93 62.13 radiation 40.0 270 < th dose independent rect. 2 5
95 62.13 temperature 10.0 270 > th dose independent rect. 7 19
106 62.17 wind 9.0 10 < th dose independent rect. 9 19
114 62.29 radiation 40.0 270 < th dose dependent rect. 2 5
118 62.43 precipitation 0.1 10 < th dose independent rect. 4 5
120 62.43 precipitation 0.1 10 < th dose dependent rect. 4 5
156 62.60 precipitation 0.1 90 < th dose independent rect. 8 19
158 62.60 precipitation 0.1 90 < th dose dependent rect. 8 19
175 62.75 precipitation 0.1 270 < th dose independent rect. 6 21
176 62.75 precipitation 0.1 270 < th dose dependent rect. 6 21
181 62.84 atmosphere 1000.0 90 > th dose dependent rect. 3 5
199 63.05 temperature 10.0 10 > th dose dependent rect. 4 5
214 63.34 atmosphere 995.0 90 > th dose independent rect. 8 19
222 63.42 atmosphere 1000.0 270 > th dose dependent rect. 4 1
234 63.61 humidity 50.0 270 > th dose dependent rect. 3 2
240 63.67 atmosphere 995.0 270 > th dose independent rect. 6 21
327 64.19 atmosphere 995.0 10 > th dose dependent rect. 4 5
338 64.28 atmosphere 1005.0 270 > th dose independent rect. 4 1
353 64.42 atmosphere 1005.0 270 > th dose independent rect. 3 3
390 64.68 humidity 50.0 270 > th dose dependent rect. 2 5
499 65.69 temperature 15.0 90 > th dose independent rect. 15 17
521 65.85 wind 1.0 270 > th dose independent rect. 3 2
534 65.98 wind 1.0 270 > th dose independent rect. 2 5
542 66.03 humidity 50.0 270 > th dose independent rect. 7 19
556 66.18 precipitation 0.1 90 < th dose independent rect. 8 7
558 66.18 precipitation 0.1 90 < th dose dependent rect. 8 7
560 66.20 humidity 50.0 270 > th dose dependent rect. 19 7
564 66.22 wind 9.0 90 < th dose independent rect. 8 7
576 66.28 temperature 10.0 90 > th dose independent rect. 8 7
577 66.28 atmosphere 1015.0 90 < th dose independent rect. 8 7
586 66.38 atmosphere 995.0 90 > th dose independent rect. 8 7
589 66.41 precipitation 0.1 270 < th dose independent rect. 2 16
590 66.41 precipitation 0.1 270 < th dose dependent rect. 2 16
604 66.50 wind 9.0 90 < th dose dependent rect. 8 19
612 66.56 radiation 40.0 90 < th dose independent rect. 15 17
637 66.69 precipitation 0.1 90 < th dose independent rect. 15 17
638 66.69 precipitation 0.1 90 < th dose dependent rect. 15 17
650 66.79 humidity 50.0 270 > th dose independent rect. 6 21
669 66.86 radiation 1.0 90 > th dose independent rect. 8 7
681 66.97 precipitation 0.1 270 < th dose independent rect. 15 15
682 66.97 precipitation 0.1 270 < th dose dependent rect. 15 15
699 67.02 wind 9.0 90 < th dose independent rect. 15 17
700 67.03 atmosphere 995.0 270 > th dose independent rect. 18 8
706 67.07 radiation 1.0 270 < th dose dependent rect. 18 8
709 67.09 wind 1.0 90 > th dose independent rect. 8 7
727 67.17 wind 1.0 270 > th dose independent rect. 7 19
728 67.18 radiation 10.0 270 < th dose independent rect. 18 8
729 67.18 atmosphere 1015.0 90 < th dose independent rect. 8 19
731 67.19 wind 9.0 270 < th dose independent rect. 18 8
743 67.24 temperature 10.0 270 > th dose independent rect. 19 7
744 67.24 temperature 30.0 270 < th dose independent rect. 19 7
745 67.24 humidity 50.0 270 > th dose independent rect. 19 7
753 67.24 temperature 10.0 270 > th dose independent rect. 2 17
754 67.24 atmosphere 1015.0 270 < th dose independent rect. 2 17
793 67.34 temperature 15.0 270 > th dose independent rect. 11 10
808 67.39 radiation 1.0 270 < th dose dependent rect. 3 14
829 67.46 wind 9.0 270 < th dose independent rect. 21 14
842 67.50 atmosphere 1010.0 270 < th dose independent rect. 12 9
855 67.58 temperature 10.0 270 > th dose independent rect. 21 14
856 67.58 atmosphere 995.0 270 > th dose independent rect. 21 14
873 67.66 precipitation 0.1 270 < th dose independent rect. 19 7
879 67.66 precipitation 0.1 270 < th dose dependent rect. 19 7
893 67.74 humidity 50.0 270 > th dose independent rect. 21 14
897 67.78 temperature 10.0 1440 > th dose independent rect. 5 5
900 67.78 atmosphere 995.0 1440 > th dose independent rect. 5 5
901 67.78 atmosphere 1015.0 1440 < th dose independent rect. 5 5
904 67.78 temperature 10.0 1440 > th dose independent rect. 10 19
915 67.84 atmosphere 1015.0 90 < th dose independent rect. 15 17
924 67.88 atmosphere 995.0 90 > th dose independent rect. 15 17
937 67.96 humidity 50.0 270 > th dose independent rect. 7 7
940 67.96 temperature 15.0 10 > th dose independent rect. 15 18