BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0225500 Os03g0225500|AK073981
         (1290 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05120.1  | chr2:1842069-1846858 REVERSE LENGTH=1286          1141   0.0  

>AT2G05120.1 | chr2:1842069-1846858 REVERSE LENGTH=1286
          Length = 1285

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1302 (47%), Positives = 842/1302 (64%), Gaps = 63/1302 (4%)

Query: 1    MFSPAIKKPHLLHRRDK--EEXXXXXXXXXXXXXXXRGFAVHDRPATGTPAPWTSS-SLL 57
            MFSP  K+     R +K                   R   + DRPATGTPAPW    S+L
Sbjct: 1    MFSPLTKRAKQSSRNEKTPRNRVPPPDSPVTPATQNRNNFISDRPATGTPAPWAPRLSVL 60

Query: 58   ARIXXXXXXXXXXXXXQIQPVHVSEFPQIVRNAQANLLQKSFSGKNMLAGGIDKETSLAW 117
            AR+             Q++PV V EFPQ++R+ Q      S+ G   ++GG+DKET L+W
Sbjct: 61   ARVSPGNNGDKGVDSDQLKPVFVGEFPQLLRDEQ------SYPGDACVSGGMDKETCLSW 114

Query: 118  MLCGNELFIWSYLASV-AKDCLVLEVPSSLMGNKEEKSLC--GNQWAVCIVRWGSS-GAS 173
             + G+++F+WS+L ++ ++ C+VLE+P  ++ N+E  S    G  W V +V W +S GA+
Sbjct: 115  FITGSKVFVWSHLTTLPSRKCVVLELPVVVLVNEESGSGLQDGKSWLVNVVSWDTSAGAA 174

Query: 174  TRSSGDILHRRSSTGFILCNKRTQAIAYWSDIYA---ESSKSSVLDLIGYXXXXXXXXXX 230
            TR+S      RS  G ++CN++T+A+ YWSDI++    +       LI            
Sbjct: 175  TRAS----RSRSPVGVVMCNRKTRAVVYWSDIFSGQEAAPAEKARHLIKRQSNGIRSSRA 230

Query: 231  XNCRINSLIAVAVPGGINECIVIASQPTGTLWMFWCSPAAVRRREIHKGTLGVYNADHSQ 290
             N  +NSLI  AV      CI IA    G LW F CSP  V+  ++        N   S 
Sbjct: 231  ENSDLNSLITTAVAAAERLCIAIACSSNGELWQFTCSPTGVKSNQVQ------LNISSSS 284

Query: 291  KNSG-GRSLAWLPSKASSKAAERTFFLLTSHELQCWSISFGHDINCKKIGSQEIVGSDGD 349
             + G  RSL W  S+  ++ +   F +LT  ++ C++I    D+   ++   EIVG+DGD
Sbjct: 285  VSEGYPRSLIWRFSQGLARESCWEFLMLTDCDIHCFTIEPYPDLTVSEVWQHEIVGTDGD 344

Query: 350  MGIKKDIAGQKNIWLLDMQIDDHGKEIIILVATFCKDRVSGSNYTQYSLLTMLYRPNQKF 409
             GIKKDIA QK IW LD+Q+DD GK I +LVAT C DR S S+YTQYSLLT+ ++   +F
Sbjct: 345  SGIKKDIASQKQIWPLDLQVDDQGKVITVLVATICMDRASSSSYTQYSLLTLQHKSEMRF 404

Query: 410  SSEDNVIKTERFLEKKAPSQVIIPKARVEDEEFLFSMRLKTGGKPSGSVIILSGDGTATI 469
            +      + E+ LEK+ P QVIIPKARVED++FLFSMRL+ GG+P GS IILSGDGTAT+
Sbjct: 405  ADG----REEKVLEKQGPIQVIIPKARVEDKDFLFSMRLRVGGRPPGSAIILSGDGTATV 460

Query: 470  AIYWRGSTRLYQFDLPWDAGKVLDASVIPSSEDRDEGAWVVLTEKAGVWAIPEKAVLVGG 529
                  STRLY+FDLP+DAGKVLDASV+ S+++ + GAW VLTEKAGVWAIPEKAV++GG
Sbjct: 461  CYCHGSSTRLYKFDLPYDAGKVLDASVLSSTDEHEYGAWTVLTEKAGVWAIPEKAVVLGG 520

Query: 530  VEPPERSLSRKGSCNEAVAEEKRRNQAFNASVVPRRASSEAWSAGERQRPALTGIAQQAV 589
            VEPPERSLSRK S NE    ++ R   +       R +S+  +  ++  P + G  +Q  
Sbjct: 521  VEPPERSLSRKNSSNERSTRDETRVTPYGVDRTAGRENSDIQNIEDKGNPKM-GFTRQTA 579

Query: 590  VDEESEMLLNRLFHDFVLSGTVHEALQKLRAAGAFDKEGEMNIFVRISKSIVNTLSKHWT 649
             DEESE LL +LF  F+LSG V  +L+KL  +GAFD++GE N+F R SKSIV+TL+KHWT
Sbjct: 580  RDEESEALLGQLFEGFLLSGKVDGSLEKLSQSGAFDRDGEANVFARKSKSIVDTLAKHWT 639

Query: 650  TTREAEFLASTIVSS-LTEXXXXXXXXXXXXVLSKCHEELSSKQRTAMLTVMEHGEKLSG 708
            TTR AE +A T++SS L E             LSKCHEEL SKQR ++  ++E+GEKL+ 
Sbjct: 640  TTRGAEIVAMTVISSQLVEKQQKHENFLHFLALSKCHEELCSKQRHSLQIILENGEKLAA 699

Query: 709  MIQLRELQNALSHQRSSIHLSPQ--SKNQTTGALWNLIQLVGEQSRRNTVLLMDRDNAEV 766
            MIQLRELQN ++  RS+   SPQ  S++Q + ALW+LIQ VGE++RRNTVLLMDRDNAEV
Sbjct: 700  MIQLRELQNMINQNRSARFGSPQAGSEDQVSCALWDLIQFVGERARRNTVLLMDRDNAEV 759

Query: 767  FYSRVSDIEDLFNCISHQLQYIITGEENPSVQMQRALELSNACMTLVQAALRYREEHKDW 826
            FYS+VS++E++F C++ QL+YII  ++    Q+QRA ELSNAC+T++Q AL Y+ EH+ W
Sbjct: 760  FYSKVSELEEVFYCLNRQLEYIIRADQPLGTQLQRACELSNACVTILQTALDYKNEHQMW 819

Query: 827  YPSPEGLITWNSQPVVRSGIWRVASFAMELLREPGAADMSMKSNLWSQLERLTDILLDAY 886
            YP  EGLI W+SQ VV +G+W +ASF + LL E    D+S KS++++ LE LT++LL+A 
Sbjct: 820  YPPLEGLIPWHSQTVVCNGLWCIASFMLHLLTEASRIDISAKSDIYTHLEVLTEVLLEAC 879

Query: 887  IGLLTAKFERGDEHGVLIQEYCDRRDELLGSLYDLAKQIVDAKYQ---ETTEVTDNLELK 943
             G   AK ER +E+  L+ EY  RRD +  SLY  AK+ ++A+ Q   E TE TD     
Sbjct: 880  AGSTFAKLEREEENKGLLNEYWTRRDTIFDSLYRQAKEFMEAEIQGIRERTEATD----- 934

Query: 944  ESIFREVTSPILATAKRHEGYQTLWQICYDLSDTGLLRSLMHDSVGPHGGFSFFVFKQLV 1003
            E IFR   S +++ AKRH GY+ +W+ICYDL+DTGLLR+LMH+ VGP GGFS+FVF+QL 
Sbjct: 935  EDIFRNRCSNLISIAKRHAGYKIMWKICYDLNDTGLLRNLMHEGVGPQGGFSYFVFQQLY 994

Query: 1004 NRRQHAKLLRLGEEFPEELANFLKERDDLLWLHEICLNRFSSASKTLHTLVSPEEDANLT 1063
            + +Q +KLLRLGEEF +EL  FLK   DL+WLH++ L++FSSAS TLHTL   +++ ++T
Sbjct: 995  DMKQFSKLLRLGEEFQDELLIFLKRHSDLVWLHQVFLHQFSSASDTLHTLALSQDEESMT 1054

Query: 1064 SNRKSL---------SFVERRRFLYLSKIAAAAGKDVDYEVKVAHIDADIRILNLQEEIV 1114
            +  +           +F +R+RFL LSKIA  A KD D E KV  I+AD+ +L LQEEI 
Sbjct: 1055 TVEERTGPEPEDVQPTFADRKRFLNLSKIAYVADKDADSESKVKRIEADLNLLKLQEEIT 1114

Query: 1115 QHDPEYAPDKYTTKPFRPLELIEMCLK-GDRELSLKAFEVFAWTRASFRSSNKGLLEACW 1173
            +  P     +   + FRP ELIE CL    R  ++KAFEVFAWT +SFR +++ LLE CW
Sbjct: 1115 KALPN---GEARNRLFRPEELIETCLNIQGRWTAIKAFEVFAWTSSSFRENHRSLLEECW 1171

Query: 1174 MNAADQDDWVSLQEESSG-GWSDEVIQESLQGTVLFNASRLCYSPDAV-VYDGSFEDVLP 1231
             NAADQDDW    + S+  GWS+E   ++L+ T LF AS+ CY P  V  +DG F  VLP
Sbjct: 1172 RNAADQDDWDRHHQASTNEGWSEEETLQNLRNTALFQASKRCYGPTRVNTFDGDFAQVLP 1231

Query: 1232 VKKEDVHLRGLEGRCLSVEEVLMQHKDFPDAGKLMMTAVIMG 1273
            +++E+      E    SVE+VLM HKDF +AGKLM+TA+++G
Sbjct: 1232 LRRENP-----EDSTSSVEDVLMSHKDFAEAGKLMLTAIMLG 1268



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 26,946,234
Number of extensions: 1126519
Number of successful extensions: 2580
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2563
Number of HSP's successfully gapped: 1
Length of query: 1290
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1180
Effective length of database: 8,090,809
Effective search space: 9547154620
Effective search space used: 9547154620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)