Os03g0216900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os03g0216900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 209.18 | 0.68 | 4.03 | -2.14 | 1.1 | 2.63 | -0.469 | -5.9 | -0.269 | 18.5 | 26.38 | 1665 | -- | -- |
| 216.14 | 0.685 | 3.85 | -0.786 | 1.1 | 2.08 | -0.579 | -- | 0.0682 | 18.4 | 26.67 | 1700 | -- | -- |
| 209.15 | 0.674 | 4.03 | -2.21 | 1.1 | 2.75 | -- | -6.65 | -0.196 | 18.5 | 26.93 | 1671 | -- | -- |
| 216.86 | 0.686 | 3.86 | -0.772 | 1.11 | 2.04 | -- | -- | 0.0404 | 18.4 | 26.51 | 1693 | -- | -- |
| 225.51 | 0.699 | 4.02 | -1.7 | -- | 3.09 | -- | -4.98 | -0.551 | -- | 23.04 | 525 | -- | -- |
| 356.45 | 0.885 | 3.85 | -0.192 | 1.26 | -- | -0.613 | -- | 0.108 | 18.6 | -- | -- | -- | -- |
| 357.4 | 0.885 | 3.85 | -0.183 | 1.26 | -- | -- | -- | 0.106 | 18.6 | -- | -- | -- | -- |
| 236.4 | 0.716 | 3.91 | -0.784 | -- | 2.69 | -- | -- | -0.305 | -- | 22.81 | 524 | -- | -- |
| 231.51 | 0.709 | 3.84 | -- | 1.14 | 1.88 | -- | -- | 0.162 | 18.4 | 27 | 1692 | -- | -- |
| 439.75 | 0.98 | 3.83 | -0.214 | -- | -- | -- | -- | 0.0807 | -- | -- | -- | -- | -- |
| 358.28 | 0.885 | 3.85 | -- | 1.26 | -- | -- | -- | 0.127 | 18.6 | -- | -- | -- | -- |
| 251.57 | 0.739 | 3.88 | -- | -- | 2.54 | -- | -- | -0.175 | -- | 23.23 | 520 | -- | -- |
| 440.95 | 0.98 | 3.82 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 4 | 219.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 11 | 219.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 23 | 219.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 20 |
| 49 | 220.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 89 | 220.51 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 94 | 220.54 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 196 | 222.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 248 | 223.31 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 294 | 224.30 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 17 |
| 323 | 225.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 403 | 227.05 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 410 | 227.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 641 | 228.67 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 709 | 229.34 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 716 | 229.42 | radiation | 30 | 1440 | < th | dose independent | rect. | 19 | 13 |
| 742 | 229.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 743 | 229.95 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 778 | 230.30 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 789 | 230.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 802 | 230.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 804 | 230.81 | temperature | 30 | 1440 | < th | dose independent | sin | 4 | NA |
| 817 | 230.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 835 | 230.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 867 | 231.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 888 | 231.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 895 | 231.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 913 | 231.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 930 | 231.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 934 | 231.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 935 | 231.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 971 | 232.19 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 18 |
| 981 | 232.28 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 986 | 232.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 988 | 232.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 999 | 232.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 22 |