BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0216900 Os03g0216900|AK073615
         (336 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51405.1  | chr1:19057780-19059582 FORWARD LENGTH=488           86   4e-17

>AT1G51405.1 | chr1:19057780-19059582 FORWARD LENGTH=488
          Length = 487

 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 28/149 (18%)

Query: 162 CREIVGKIMEQVRTESEQWTEMQDMLEQVRLEMQELQSSRDTWQRRAIASDISLRSLNSQ 221
           C+ ++ KI ++VR E+EQW++MQ+ML QVR EM+ELQS RD WQ RA+ +D  +++L+S 
Sbjct: 321 CKVVMRKIADEVRAEAEQWSQMQEMLNQVRKEMEELQSCRDFWQNRALEADSEIQNLHSS 380

Query: 222 VLEWKHRAQVSEQHVEDLQKKISELESKLHTFKAHFPSPGQPNQEWSEACKMEKPIRSNK 281
           V  W+ +A  SE  +++LQ                           +E C +++ I+  +
Sbjct: 381 VEGWRRKALSSEAKLKNLQ---------------------------AEVCGLQEEIKRLR 413

Query: 282 AQHPPRPSHEPGGGREKEKHVLICRVKHS 310
            +    P        E EK VLICR+K +
Sbjct: 414 KEDKLEPEKNKLPS-ESEKRVLICRLKEN 441



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.126    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,483,297
Number of extensions: 243553
Number of successful extensions: 827
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)