Os03g0213300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0213300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.85 | 0.215 | 13.1 | 1.12 | 0.671 | 0.845 | -1.02 | -2.14 | 0.379 | 18.7 | 1.042 | 886 | -- | -- |
| 21.45 | 0.216 | 13.1 | 1.05 | 0.807 | 1.04 | 0.428 | -- | 0.362 | 18.7 | 1.042 | 895 | -- | -- |
| 21.18 | 0.214 | 13.1 | 1.1 | 0.694 | 0.899 | -- | -0.893 | 0.379 | 18.7 | 1.082 | 890 | -- | -- |
| 21.93 | 0.218 | 13.1 | 1.05 | 0.845 | 1.08 | -- | -- | 0.359 | 18.7 | 1.08 | 895 | -- | -- |
| 24.83 | 0.232 | 13.1 | 0.97 | -- | 0.096 | -- | -0.0624 | 0.331 | -- | 45.53 | 1346 | -- | -- |
| 24.02 | 0.23 | 13.1 | 0.945 | 0.118 | -- | 0.369 | -- | 0.306 | 16.7 | -- | -- | -- | -- |
| 24.36 | 0.231 | 13.1 | 0.947 | 0.12 | -- | -- | -- | 0.307 | 16.3 | -- | -- | -- | -- |
| 23.52 | 0.226 | 13.1 | 0.959 | -- | 0.215 | -- | -- | 0.347 | -- | 0.1061 | 1393 | -- | -- |
| 47.47 | 0.323 | 13.1 | -- | 0.175 | -0.145 | -- | -- | 0.192 | 21.1 | 2.444e-06 | 524 | -- | -- |
| 25.14 | 0.234 | 13.1 | 0.942 | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
| 48.01 | 0.324 | 13.1 | -- | 0.102 | -- | -- | -- | 0.202 | 16.5 | -- | -- | -- | -- |
| 46.65 | 0.318 | 13.1 | -- | -- | -0.308 | -- | -- | 0.179 | -- | 0.009947 | 10661 | -- | -- |
| 48.56 | 0.325 | 13.1 | -- | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 2 | 20.68 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 3 | 20.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 6 | 20.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 10 | 20.74 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 4 |
| 11 | 20.74 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 6 |
| 31 | 20.84 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 36 | 20.85 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 11 |
| 38 | 20.86 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 10 |
| 39 | 20.86 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 21 |
| 48 | 20.87 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 53 | 20.87 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 20 |
| 95 | 20.97 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 107 | 20.99 | temperature | 25 | 270 | > th | dose independent | sin | 15 | NA |
| 108 | 20.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 114 | 21.01 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 117 | 21.01 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 140 | 21.02 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 158 | 21.04 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 175 | 21.05 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 20 |
| 181 | 21.06 | radiation | 20 | 4320 | < th | dose independent | rect. | 1 | 5 |
| 192 | 21.06 | temperature | 20 | 10 | > th | dose dependent | sin | 14 | NA |
| 210 | 21.08 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 8 |
| 211 | 21.08 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 229 | 21.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 241 | 21.12 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 14 |
| 246 | 21.12 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 266 | 21.15 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 271 | 21.15 | wind | 7 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 272 | 21.15 | wind | 9 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 274 | 21.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 290 | 21.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 320 | 21.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 331 | 21.19 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 338 | 21.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 344 | 21.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 355 | 21.21 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 366 | 21.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 389 | 21.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 399 | 21.23 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 404 | 21.23 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 408 | 21.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 427 | 21.24 | radiation | 1 | 4320 | < th | dose independent | sin | 16 | NA |
| 435 | 21.24 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 465 | 21.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 496 | 21.26 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 499 | 21.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 541 | 21.27 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 585 | 21.28 | radiation | 1 | 4320 | > th | dose independent | sin | 16 | NA |
| 586 | 21.28 | wind | 9 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 601 | 21.28 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 606 | 21.28 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 607 | 21.28 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 613 | 21.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 641 | 21.29 | wind | 7 | 1440 | > th | dose independent | rect. | 2 | 6 |
| 645 | 21.29 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 15 |
| 656 | 21.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 716 | 21.31 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 2 |
| 776 | 21.32 | wind | 9 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 830 | 21.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 872 | 21.34 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 13 |
| 916 | 21.35 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 9 |
| 925 | 21.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 926 | 21.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 964 | 21.35 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 966 | 21.36 | wind | 9 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 977 | 21.36 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |