BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0213300 Os03g0213300|AK121507
(1529 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07980.1 | chr5:2549432-2554669 REVERSE LENGTH=1502 151 4e-36
AT5G07940.1 | chr5:2534720-2540086 FORWARD LENGTH=1527 146 7e-35
AT5G07970.1 | chr5:2544126-2547916 REVERSE LENGTH=1098 142 1e-33
AT3G29385.1 | chr3:11284395-11285402 REVERSE LENGTH=219 97 1e-19
>AT5G07980.1 | chr5:2549432-2554669 REVERSE LENGTH=1502
Length = 1501
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 169/337 (50%), Gaps = 38/337 (11%)
Query: 1214 RINPQMAPSWFERYGNHRNGQNLSMFNLQKTPVPPYNVQKPSWNMDNNSAEQRIDSGQSV 1273
+I+PQMAPSW+ +YG +NG + + + P + + S N+ ++ +D SV
Sbjct: 1182 QISPQMAPSWYSQYGTFKNGLVQPVNDTGR--FTPLKIGEQSSNVGSS-----VDGTHSV 1234
Query: 1274 KPGHYISSKKMEVS-----VPSS-----------IMQRRPKKRKSAESDLVSWHK-LIEH 1316
+ + ++M S +PSS + +PKKRK+A S+L+ W+K +++
Sbjct: 1235 QLSQHFKMQQMSGSTLGAEIPSSESLPHGATEQLLKVNKPKKRKTATSELIPWNKEVMQG 1294
Query: 1317 PKTLRNMSTTEMDWAWAANRLMEKAEDDAENLEDVPVNYLWXXXXXXXXXXXXXXXPAIP 1376
+ L+ + E+DWA A NR EK E + LED P P P
Sbjct: 1295 HQRLKTLGEAEVDWARATNRFAEKVEFETL-LEDSPPIKSKRRLVYTTQLMQQLCSPP-P 1352
Query: 1377 AKVLKAQAASAYEGVTYNIAMFTLGDACNMASYNSRT---LTDHENNSSEQTNAKKMEDR 1433
A+V+ A+S YE V Y A LGDAC+ +S + + N SE+T +K+ D+
Sbjct: 1353 ARVISLVASSNYEFVAYTAARGALGDACSSSSTDRSEGFWPPNISNPLSERTKTEKISDQ 1412
Query: 1434 -LSKVVEVFTGRIKKMENDFVSLNKRSSMLDVQLECQDLERISIVNRLGRFHGRNHAAGV 1492
+SK E F R +K+E DF L +++ D+++E QDLE+ +++NR +FH
Sbjct: 1413 YISKAAEDFISRTRKLETDFARLENGTTIPDLRVEVQDLEKFAVINRFAKFH-------- 1464
Query: 1493 EASSASEMIPRRIFPERHVMSFAVPGNLPEGVYCLSL 1529
S + RI P+R+V +P N+P+ V CLSL
Sbjct: 1465 PPSMDRTLNSVRINPQRYVTVAPMPQNIPDRVQCLSL 1501
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 134/312 (42%), Gaps = 59/312 (18%)
Query: 59 LPTDQLSAMTNEMPNNESTAYAWSHQLHGSSDPGLASNSQMLNP---SSNTNWEQYGGAP 115
L QL+++ N + SH ++G P ++S L P + NTNW G +P
Sbjct: 213 LEARQLNSLNRNAVNGSCVSDNQSHMINGI--PLQNASSNWLQPDLMTGNTNWMHRGISP 270
Query: 116 GVANFVNGSMFSNTPIQPMRPMGLAAHQMNPSLY--PINTT----------------SRD 157
V +G M + Q L A Q PSLY P++ T ++
Sbjct: 271 AVQGSSSGLMITPDHGQ----ANLMAQQFEPSLYGMPVSGTNAPHNAFSSSQMNRLAAQH 326
Query: 158 GSGNQHSQFLGIPTDPRNAMARAAAHQSEKASMQFSSLMSEQG-PSS-SMQNFLGKVGDN 215
GS N+ S PT N +H +++ L S+ PSS SM NF D+
Sbjct: 327 GSANRTSSVTNQPTSFLNQGDVQDSHMLPRSTYPEKLLFSQTSVPSSNSMPNFESLQEDD 386
Query: 216 IK---VGTPVPVNHLQ-HGVQHQDFHGRPNQVDFQAGLREKSTMQVESGNGGASLDPTEE 271
+ + ++ G Q F P ++ +KST +LDPTEE
Sbjct: 387 SRERNISVQAKFGQMEGSGPSEQSFIKAPENIN----ALQKST----------ALDPTEE 432
Query: 272 KFLFGNDEDSNWGALLRGGNDHGSSM-------DNDNFGGALPSLQSGSWSALMQEALQS 324
K LFG+D D+ W A GN S+ +D F G PSLQSGSWSALMQ A+
Sbjct: 433 KILFGSD-DNLWEAF---GNSTDMSLTGNLMSSSSDLFDGC-PSLQSGSWSALMQSAVAE 487
Query: 325 TTSDNSPKEEWS 336
T+SD++ EW+
Sbjct: 488 TSSDDAGVHEWA 499
>AT5G07940.1 | chr5:2534720-2540086 FORWARD LENGTH=1527
Length = 1526
Score = 146 bits (369), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 170/342 (49%), Gaps = 36/342 (10%)
Query: 1209 RSERPRINPQMAPSWFERYGNHRNGQNLSMFNLQKTPVPPYNVQKPSWNMDNNSAEQRID 1268
R++ +I+PQMAPSW+ +YG +NG M + + P + + S N+ E +D
Sbjct: 1200 RADHQQISPQMAPSWYSQYGTFKNGLVQPMNDTGR--FTPLKIGEQSSNV-----ESSVD 1252
Query: 1269 SGQSVKPGHYISSKKME-----VSVPSS-----------IMQRRPKKRKSAESDLVSWHK 1312
+V+ ++M V PSS + +PKKRK+A S+L SW+K
Sbjct: 1253 GTHTVQSCKQCLMEQMSGSAPGVETPSSDSLLHGATDKLLKVDKPKKRKTATSELQSWNK 1312
Query: 1313 -LIEHPKTLRNMSTTEMDWAWAANRLMEKAEDDAENLEDVPVNYLWXXXXXXXXXXXXXX 1371
+++ + L+ +S E++WA NR EK E + LED P
Sbjct: 1313 EVMQDSQRLKTLSEAEINWARETNRFAEKVEFETL-LEDSPPIRSKRRLIHTTQLMQQLF 1371
Query: 1372 XPAIPAKVLKAQAASAYEGVTYNIAMFTLGDACNMASYNSRTLTDHENNS---SEQTNAK 1428
P PA+V+ A+S Y+ V Y LGDAC+ +S + NNS SE+T +
Sbjct: 1372 SPP-PARVISLVASSNYDVVAYTAGRAALGDACSSSSTDRSEGFSPPNNSNPLSERTENE 1430
Query: 1429 KMEDR-LSKVVEVFTGRIKKMENDFVSLNKRSSMLDVQLECQDLERISIVNRLGRFHGRN 1487
K+ D+ +SK E F R +K+E DF L +++ D+++E QDLE+ +++NR +FH +
Sbjct: 1431 KISDQYISKAAEDFISRTRKLETDFAGLENGTTIPDLRVEVQDLEKFAVINRFAKFHPPS 1490
Query: 1488 HAAGVEASSASEMIPRRIFPERHVMSFAVPGNLPEGVYCLSL 1529
+ +S ++ +R+V +P N+P+ V CLSL
Sbjct: 1491 SSMNRTVNSL------KLNLQRYVTIAPMPQNIPDRVQCLSL 1526
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 116/272 (42%), Gaps = 74/272 (27%)
Query: 105 NTNWEQYGGAPGVANFVNGSMFSNTPIQPMRPMGLAAHQMNPSLYPINTTSRDGSGNQHS 164
NTNW G +P V +G M + Q L A Q PSLY + + G+ +
Sbjct: 262 NTNWMHRGISPAVQGSSSGLMITPEHGQS----NLMAQQFGPSLYGMPVS---GTNAPQN 314
Query: 165 QFLGIPTDPRNAMARAAAHQSEKASMQFSSLM-------SEQGPSSSMQNFLGKVGDNIK 217
F + + R A +A++S + Q +S + S+ P S+ Q +
Sbjct: 315 AFSSVQMN-RLAAPHGSANRSYSLTNQPTSFLNQGDVQDSQMHPRSTYQE------KALF 367
Query: 218 VGTPVPVNHLQHGVQHQDFHGRPNQVDFQ--------------------AGLREKSTMQV 257
T VP D + RPN +FQ +G EKS M+V
Sbjct: 368 SQTSVP-----------DSNNRPNFENFQQDDSRERNISAQDKFCQMEDSGPAEKSFMKV 416
Query: 258 -ESGNG---GASLDPTEEKFLFGNDEDSNWGALLRGGNDHGSSMD----------NDNFG 303
E+ N ++LDPTEEK LFG+D D+ W A GSS D N +
Sbjct: 417 PENMNALQKSSALDPTEEKILFGSD-DNLWDAF-------GSSTDMSLQGNLMSSNSDLF 468
Query: 304 GALPSLQSGSWSALMQEALQSTTSDNSPKEEW 335
A PSLQSGSWSALMQ A+ TTSD++ W
Sbjct: 469 DACPSLQSGSWSALMQSAVAETTSDDAGVHGW 500
>AT5G07970.1 | chr5:2544126-2547916 REVERSE LENGTH=1098
Length = 1097
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 168/346 (48%), Gaps = 39/346 (11%)
Query: 1210 SERPRINPQMAPSWFERYGNHRNG-----QNLSMFNLQKTPVPPYNVQKPSWNMDNNSAE 1264
S+ +I+PQ+APS F +Y +NG + F L K N+ + + +
Sbjct: 765 SDHQQISPQIAPSRFSQYEAFKNGLVQPVNDTGRFTLLKIGERYSNLGNSDDGLHSVQSS 824
Query: 1265 QRIDSGQSVKPGHYISSKKMEVSVPSS----------------IMQRRPKKRKSAESDLV 1308
+++++ PG+ + +++ S P + +PKKRK+ S+L+
Sbjct: 825 KQLNTA---DPGYIVHMQQISGSTPGVETLSSASLPCGATDQLLKVYKPKKRKNVTSELL 881
Query: 1309 SWHK-LIEHPKTLRNMSTTEMDWAWAANRLMEKAEDDAENLEDVPVNYLWXXXXXXXXXX 1367
SW K +++ P+ L+ + E+DWA A NR EK E A LED P
Sbjct: 882 SWSKEVMQRPQRLKTLGEAEVDWARATNRFAEKVEF-ATLLEDGPPIRSKRRLIYTTQLM 940
Query: 1368 XXXXXPAIPAKVLKAQAASAYEGVTYNIAMFTLGDACNMASYN---SRTLTDHENNSSEQ 1424
P +P +V ++YE V Y+ A LGDAC+ S + L ++ N SE+
Sbjct: 941 QQLFRP-LPGRV--KSLVTSYEFVAYSAARAALGDACSSTSTDRIEGFLLQNNLNPLSER 997
Query: 1425 TNAKKMEDR-LSKVVEVFTGRIKKMENDFVSLNKRSSMLDVQLECQDLERISIVNRLGRF 1483
T +KM D+ +SK E F R KK+E DF L K +++ D+++E QDLER +++NR F
Sbjct: 998 TETEKMSDQYISKAAEDFISRTKKLETDFAGLEKGTTITDLRVEVQDLERFAVINRFASF 1057
Query: 1484 HGRNHAAGVEASSASEMIPRRIFPERHVMSFAVPGNLPEGVYCLSL 1529
H + + SS R+ P+R+V VP ++P+ V CLS
Sbjct: 1058 HQSSSSMDRSVSSL------RLNPQRYVTVAPVPRHIPDRVQCLSF 1097
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 63/114 (55%), Gaps = 18/114 (15%)
Query: 247 AGLREKSTMQV----ESGNGGASLDPTEEKFLFGNDEDSNWGA------LLRGGNDHGSS 296
+GL EKS M+V + +LDPTEEK LFG+D D+ W A + GN SS
Sbjct: 401 SGLSEKSFMKVPENINTLQKSTTLDPTEEKILFGSD-DNLWEAFGNSTDMSLTGNLMSSS 459
Query: 297 MDNDNFGGALPSLQSGSWSALMQEALQSTTSDNSPKEEWSGLSFQKQEQIIANN 350
D A PSLQSGSWSALMQ A+ T SD++ EW KQ+ + ANN
Sbjct: 460 SD---LFDACPSLQSGSWSALMQSAVAETASDDAGVHEWGS----KQQSVWANN 506
>AT3G29385.1 | chr3:11284395-11285402 REVERSE LENGTH=219
Length = 218
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 107/233 (45%), Gaps = 22/233 (9%)
Query: 1298 KKRKSAESDLVSWHKL-IEHPKTLRNMSTTEMDWAWAANRLMEKAEDDAENLEDVPVNYL 1356
KKRKS+ WHK+ ++ + N+ E +W A N L EK D E + L
Sbjct: 7 KKRKSSTFLQSPWHKVYLQGSELCHNIRIAEQEWNLATNTLSEKV-DTNEAISPSKRRLL 65
Query: 1357 WXXXXXXXXXXXXXXXPAIPAKVLKAQAASAYEGVTYNIAMFTLGDACNMASYNSRTLTD 1416
PA L AA YE V Y ++ L ++C S R+ D
Sbjct: 66 -----SSTHLMQQLLQPAPTFVFLGDNAALNYEIVLYYVSRINLANSC---SLKCRSDLD 117
Query: 1417 HENNSSEQTNAKKMEDRLSKVVEVFTGRIKKMENDFVSLNKRSSMLDVQLECQDLERISI 1476
N A + + S +V F +I+K+E++F SL + +S+LD+ E QDLER S+
Sbjct: 118 KSINRQTSKTASNQDQQHSLLVNAFNEKIQKLESNFQSLERTTSILDIIFEIQDLERFSM 177
Query: 1477 VNRLGRFHGRNHAAGVEASSASEMIPRRIFPERHVMSFAVPGNLPEGVYCLSL 1529
+N LG+FH R +R+ P ++ ++ +P NLPE ++CL L
Sbjct: 178 INHLGKFHNRAKTF------------KRLIPHKYAVAIQMPMNLPEPLHCLPL 218
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.124 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 33,932,872
Number of extensions: 1488022
Number of successful extensions: 4056
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4035
Number of HSP's successfully gapped: 8
Length of query: 1529
Length of database: 11,106,569
Length adjustment: 112
Effective length of query: 1417
Effective length of database: 8,035,977
Effective search space: 11386979409
Effective search space used: 11386979409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 118 (50.1 bits)