Os03g0200700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Surfeit 1 homolog.
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Os03g0200700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Surfeit 1 homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.71 | 0.252 | 8.86 | -0.49 | 0.717 | -1.05 | -0.105 | 0.193 | 0.0931 | 23.7 | 19.7 | 3870 | -- | -- |
| 28.77 | 0.25 | 8.85 | -0.478 | 0.721 | -1.09 | -0.111 | -- | 0.0969 | 23.6 | 19.79 | 3870 | -- | -- |
| 28.73 | 0.25 | 8.86 | -0.481 | 0.719 | -1.07 | -- | 0.164 | 0.0975 | 23.7 | 19.64 | 3845 | -- | -- |
| 28.76 | 0.25 | 8.85 | -0.459 | 0.719 | -1.1 | -- | -- | 0.102 | 23.7 | 19.68 | 3863 | -- | -- |
| 60.91 | 0.364 | 8.87 | -0.503 | -- | -1.13 | -- | 0.259 | 0.0673 | -- | 19.7 | 3774 | -- | -- |
| 48.02 | 0.325 | 8.79 | 0.16 | 0.761 | -- | -0.129 | -- | 0.369 | 23.8 | -- | -- | -- | -- |
| 48.09 | 0.325 | 8.79 | 0.165 | 0.762 | -- | -- | -- | 0.37 | 23.8 | -- | -- | -- | -- |
| 60.75 | 0.363 | 8.84 | -0.509 | -- | -1.19 | -- | -- | 0.0929 | -- | 19.7 | 3787 | -- | -- |
| 31.43 | 0.261 | 8.83 | -- | 0.731 | -0.838 | -- | -- | 0.212 | 23.6 | 19.57 | 2670 | -- | -- |
| 84.63 | 0.43 | 8.77 | 0.187 | -- | -- | -- | -- | 0.379 | -- | -- | -- | -- | -- |
| 48.81 | 0.327 | 8.8 | -- | 0.764 | -- | -- | -- | 0.352 | 23.8 | -- | -- | -- | -- |
| 62.65 | 0.369 | 8.83 | -- | -- | -0.945 | -- | -- | 0.195 | -- | 19.7 | 2401 | -- | -- |
| 85.56 | 0.432 | 8.78 | -- | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.50 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 2 | 28.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 8 | 28.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 14 |
| 15 | 28.66 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 29 | 28.77 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 40 | 28.87 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 50 | 28.92 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 79 | 29.07 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 83 | 29.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 22 |
| 109 | 29.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 9 | 22 |
| 119 | 29.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 122 | 29.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 138 | 29.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 141 | 29.28 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 3 |
| 165 | 29.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 173 | 29.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 213 | 29.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 21 |
| 228 | 29.47 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 234 | 29.47 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 252 | 29.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 265 | 29.52 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 278 | 29.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 285 | 29.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 300 | 29.57 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 344 | 29.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 429 | 29.77 | temperature | 20 | 4320 | < th | dose dependent | sin | 12 | NA |
| 485 | 29.87 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 516 | 29.94 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 691 | 30.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 747 | 30.30 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 774 | 30.34 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 784 | 30.35 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 787 | 30.36 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 790 | 30.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 814 | 30.39 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 843 | 30.42 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 844 | 30.42 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 936 | 30.49 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 959 | 30.50 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 986 | 30.52 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |