BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0200700 Os03g0200700|AK103392
         (343 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17910.1  | chr3:6133581-6136053 FORWARD LENGTH=355            340   5e-94
AT1G48510.1  | chr1:17934889-17936651 FORWARD LENGTH=385          189   2e-48

>AT3G17910.1 | chr3:6133581-6136053 FORWARD LENGTH=355
          Length = 354

 Score =  340 bits (873), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 168/294 (57%), Positives = 212/294 (72%), Gaps = 7/294 (2%)

Query: 49  GKEAGAWSKLFLFAPGAITFGLGSWQLFRRQEKIEMLDYRTRRLEMEPIAWNQMAPSDLS 108
            K    WS+L LF PGAITFGLGSWQ+ RR+EK + L+Y+ +RL MEPI  N   P D +
Sbjct: 67  NKRGSKWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKLNIDHPLDKN 126

Query: 109 AGVDPATPEFRRIVCEGDFDEERSVFVGPRSRSISGVTENGYYVVTPLIPRPSEHGSSWP 168
                   EFRR+ C+G FDE+RS+++GPRSRSISG+TENG++V+TPL+P P +  S   
Sbjct: 127 LNAL----EFRRVSCKGVFDEQRSIYLGPRSRSISGITENGFFVITPLMPIPGDLDSMQS 182

Query: 169 PILVNRGWVPRDWRDKNVQDHQGVREVPEYKEADKKTDGKGSWWKFWSNSKEPEQSCEIE 228
           PILVNRGWVPR WR+K+ +  +      +  +A   ++   SWWKFWS  K P  + E  
Sbjct: 183 PILVNRGWVPRSWREKSQESAEAEFIANQSTKAKSPSNEPKSWWKFWS--KTPVITKEHI 240

Query: 229 KPVKPPVRVLGVIRGSEKPSIFVPANEPSVGQWFYVDVPMIARACGLPENTIYIEDINED 288
             VKP V V+GVIRG E PSIFVP+N+PS GQWFYVDVP +ARA GLPENTIY+ED++E 
Sbjct: 241 SAVKP-VEVVGVIRGGENPSIFVPSNDPSTGQWFYVDVPAMARAVGLPENTIYVEDVHEH 299

Query: 289 VSPTNPYPVPKDVSTLIHHSVMPHDHLKYTVTWYTLSAAVTFMAAKRIKAKKVK 342
           V  + PYPVPKD++TLI   VMP DHL Y++TWY+LSAAVTFMA KR+KAK V+
Sbjct: 300 VDRSRPYPVPKDINTLIRSKVMPQDHLNYSITWYSLSAAVTFMAYKRLKAKPVR 353



>AT1G48510.1 | chr1:17934889-17936651 FORWARD LENGTH=385
          Length = 384

 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/290 (38%), Positives = 159/290 (54%), Gaps = 15/290 (5%)

Query: 56  SKLFLFAPGAITFGLGSWQLFRRQEKIEMLDYRTRRLEMEPIAWNQMAPSDLSAGVDPAT 115
           S L  +  G  T+GLG    F  Q ++E LD R + LEM+P+  N     D   G+    
Sbjct: 54  SALLWYLVGFTTYGLGETYKFL-QTQVEHLDSRKQCLEMKPMKLNTTKDLD---GLG--- 106

Query: 116 PEFRRIVCEGDFDEERSVFVGPRSRSISGVTENGYYVVTPLIPRPSEHGSSWPPILVNRG 175
             FRR+VC+G FDE+RS++VGP+ RS+S  +E G+YV+TPL+P P+E  S   PILVNRG
Sbjct: 107 --FRRVVCKGIFDEQRSIYVGPKPRSMSKSSEIGFYVITPLLPIPNEPNSMKSPILVNRG 164

Query: 176 WVPRDWRDKNVQDHQGVREVPEYKEADKKTD----GKGSWWKFWSNSKEPEQSCEIEKPV 231
           WVP DW++ +++       V   KE+ K        +    KFW     P    E +   
Sbjct: 165 WVPSDWKENSLESLGTGGLVAAAKESRKANKLLSSQQSLLSKFWYKLNNP-MIVEDQVSR 223

Query: 232 KPPVRVLGVIRGSEKPSIFVPANEPSVGQWFYVDVPMIARACGLPENTIYIEDINEDVSP 291
              V V+GV+R SE P I+   N PS   WFY+DVP +A A G  E+T+YIE    D+  
Sbjct: 224 AMHVEVVGVVRKSETPGIYTLVNYPSSLAWFYLDVPKLALAMGFGEDTMYIESTYTDMDE 283

Query: 292 TNPYPVPKDVSTLIHHSVMPHDHLKYTVTWYTLSAAVTFMAAKRIKAKKV 341
           +  YPVP+DV  L     +P D+  YTV W+  S+   F+ A  I  +++
Sbjct: 284 SRTYPVPRDVENLTRSKDIPLDYHLYTVLWH-WSSLTCFIKASSILMRRL 332



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,506,165
Number of extensions: 357340
Number of successful extensions: 710
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 244
Effective length of database: 8,392,385
Effective search space: 2047741940
Effective search space used: 2047741940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)