Os03g0196400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF588 family protein.
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Os03g0196400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF588 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.19 | 0.593 | 10.7 | 4.16 | 0.621 | 1.75 | -1.4 | 1.34 | 0.67 | 1.69 | 29.3 | 322 | -- | -- |
| 160.94 | 0.591 | 10.7 | 4.39 | 0.635 | 1.75 | -1.23 | -- | 0.707 | 1.61 | 30.37 | 322 | -- | -- |
| 165.87 | 0.6 | 10.7 | 4.22 | 0.711 | 1.6 | -- | 0.815 | 0.678 | 2.42 | 28.26 | 337 | -- | -- |
| 166.15 | 0.6 | 10.7 | 4.41 | 0.663 | 1.63 | -- | -- | 0.719 | 2.34 | 29.03 | 315 | -- | -- |
| 181.7 | 0.628 | 10.7 | 4.57 | -- | 2.25 | -- | 0.219 | 0.779 | -- | 31.04 | 179 | -- | -- |
| 199.47 | 0.662 | 10.8 | 3.99 | 1.07 | -- | -0.785 | -- | 0.375 | 3.21 | -- | -- | -- | -- |
| 201.29 | 0.664 | 10.8 | 4.01 | 1.07 | -- | -- | -- | 0.379 | 3.41 | -- | -- | -- | -- |
| 181.35 | 0.627 | 10.7 | 4.58 | -- | 2.15 | -- | -- | 0.807 | -- | 30.4 | 190 | -- | -- |
| 364.38 | 0.889 | 11 | -- | 1.05 | -2.59 | -- | -- | -0.872 | 3.88 | 214.6 | 47520 | -- | -- |
| 265.84 | 0.762 | 10.8 | 4.06 | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
| 625.13 | 1.17 | 10.9 | -- | 1.15 | -- | -- | -- | -0.0674 | 3.4 | -- | -- | -- | -- |
| 424.65 | 0.96 | 11.1 | -- | -- | -2.67 | -- | -- | -0.841 | -- | 229.5 | 47520 | -- | -- |
| 699.67 | 1.23 | 10.9 | -- | -- | -- | -- | -- | -0.0423 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 5 | 156.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 15 | 157.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 63 | 159.73 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 76 | 160.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 77 | 160.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 139 | 162.43 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 150 | 162.80 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 20 |
| 209 | 164.26 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 235 | 164.68 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 250 | 164.90 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 253 | 164.95 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 22 |
| 264 | 165.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 18 |
| 266 | 165.07 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 277 | 165.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 281 | 165.29 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 294 | 165.58 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 344 | 166.11 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 23 |
| 389 | 166.48 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 404 | 166.61 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 16 |
| 418 | 166.73 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 21 |
| 424 | 166.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 432 | 166.85 | atmosphere | 1015 | 10 | < th | dose dependent | sin | 20 | NA |
| 452 | 166.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 454 | 166.98 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 16 |
| 516 | 167.26 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 22 |
| 532 | 167.33 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 22 |
| 543 | 167.37 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 9 | 11 |
| 601 | 167.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 641 | 167.71 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 659 | 167.76 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 665 | 167.78 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 698 | 167.88 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 23 |
| 707 | 167.90 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 23 |
| 748 | 168.00 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 792 | 168.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 837 | 168.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 19 |
| 894 | 168.41 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |