BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0196400 Os03g0196400|J065162C06
         (103 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35760.1  | chr2:15032059-15033094 FORWARD LENGTH=202           72   6e-14
AT4G16442.1  | chr4:9272042-9272970 REVERSE LENGTH=183             71   1e-13
AT4G25830.1  | chr4:13133727-13134790 FORWARD LENGTH=176           57   1e-09

>AT2G35760.1 | chr2:15032059-15033094 FORWARD LENGTH=202
          Length = 201

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 13  QVMAYIVISXXXXXXXXXLIGKYGQPEFQWMKTCHLYKRFCAQAGGGVACAIAASVNMVG 72
           Q +AY+ ++            K G+PE QWMK C++Y +FC Q G G+A A+ A + MV 
Sbjct: 118 QAVAYLCVAGVAAAAQSAAFAKLGEPELQWMKICNMYGKFCNQVGEGIASALFACIGMVL 177

Query: 73  VALISAFNLFRLYGNSN 89
           ++ ISAF +FRLYG S 
Sbjct: 178 ISCISAFGVFRLYGGSK 194



>AT4G16442.1 | chr4:9272042-9272970 REVERSE LENGTH=183
          Length = 182

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query: 13  QVMAYIVISXXXXXXXXXLIGKYGQPEFQWMKTCHLYKRFCAQAGGGVACAIAASVNMVG 72
           Q MAY+ ++         +I + G+ + QWM+ C +Y +FC Q   GV+ A+ AS+ MV 
Sbjct: 99  QAMAYLNVAAIAATAESGVIAREGEEDLQWMRVCTMYGKFCNQMAIGVSSALLASIAMVF 158

Query: 73  VALISAFNLFRLYGNSN 89
           V+ ISAF+LFRLYG + 
Sbjct: 159 VSCISAFSLFRLYGATK 175



>AT4G25830.1 | chr4:13133727-13134790 FORWARD LENGTH=176
          Length = 175

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 39/74 (52%)

Query: 13  QVMAYIVISXXXXXXXXXLIGKYGQPEFQWMKTCHLYKRFCAQAGGGVACAIAASVNMVG 72
           Q  AY+V +         L+   G  E QWMK C+ + RFC Q G  +     A+  MV 
Sbjct: 91  QTAAYVVFAGTSAAAQHSLLVVTGSRELQWMKWCYKFTRFCFQMGSAIILNYIAAALMVL 150

Query: 73  VALISAFNLFRLYG 86
           ++ ISAFNLFRLY 
Sbjct: 151 LSSISAFNLFRLYS 164



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,568,495
Number of extensions: 45112
Number of successful extensions: 116
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 4
Length of query: 103
Length of database: 11,106,569
Length adjustment: 73
Effective length of query: 30
Effective length of database: 9,105,201
Effective search space: 273156030
Effective search space used: 273156030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 104 (44.7 bits)