Os03g0192500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os03g0192500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.08 | 0.502 | 11.9 | -0.174 | 3 | -2.91 | 2.48 | 2.22 | -0.185 | 8.57 | 16.6 | 227 | 14 | 13.3 |
| 117.39 | 0.505 | 11.9 | -0.381 | 3.22 | -2.64 | 2.08 | -- | -0.221 | 8.48 | 16.57 | 207 | 14.2 | 13.4 |
| 128.04 | 0.527 | 11.9 | -0.158 | 3.15 | -2.92 | -- | 1.21 | -0.156 | 8.46 | 17.75 | 208 | 14.3 | 13.5 |
| 124.32 | 0.519 | 11.9 | -0.297 | 3.04 | -2.86 | -- | -- | -0.248 | 8.49 | 16.87 | 204 | 14.3 | 13.3 |
| 160.62 | 0.59 | 12 | -0.0979 | -- | -5.47 | -- | 2.03 | -0.164 | -- | 9.502 | 328 | 12.6 | 12.5 |
| 213.39 | 0.685 | 11.9 | -0.798 | 4.71 | -- | 2.37 | -- | -0.458 | 8.73 | -- | -- | -- | -- |
| 231.96 | 0.713 | 11.9 | -0.722 | 4.71 | -- | -- | -- | -0.459 | 8.7 | -- | -- | -- | -- |
| 141.69 | 0.554 | 12 | -0.205 | -- | -5.42 | -- | -- | -0.288 | -- | 2.661 | 423 | 11.3 | 12.5 |
| 126.93 | 0.525 | 11.9 | -- | 2.96 | -2.97 | -- | -- | -0.206 | 8.4 | 16.32 | 205 | 14.3 | 13.3 |
| 1487.37 | 1.8 | 12.1 | -0.712 | -- | -- | -- | -- | -0.42 | -- | -- | -- | -- | -- |
| 245.69 | 0.733 | 11.9 | -- | 4.71 | -- | -- | -- | -0.378 | 8.71 | -- | -- | -- | -- |
| 138.32 | 0.548 | 12 | -- | -- | -5.44 | -- | -- | -0.213 | -- | 4.327 | 387 | 11.6 | 12.9 |
| 1500.74 | 1.81 | 12 | -- | -- | -- | -- | -- | -0.341 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.30 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 13 |
| 53 | 130.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 63 | 133.21 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 65 | 133.32 | temperature | 30.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 66 | 133.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 71 | 134.12 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 14 |
| 72 | 134.12 | temperature | 20.0 | 270 | > th | dose dependent | sin | 16 | NA |
| 92 | 135.54 | temperature | 10.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 93 | 135.55 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 96 | 135.73 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 14 |
| 103 | 136.03 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 7 |
| 235 | 142.87 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 370 | 147.23 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 383 | 147.65 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 18 |
| 389 | 147.76 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 5 |
| 395 | 147.99 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 454 | 149.37 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 531 | 150.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 536 | 150.42 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 537 | 150.42 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 4 |
| 542 | 150.46 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 5 |
| 640 | 152.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 655 | 152.16 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 692 | 152.55 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 719 | 152.85 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 729 | 152.86 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 760 | 153.26 | radiation | 30.0 | 90 | < th | dose independent | rect. | 15 | 4 |
| 795 | 153.66 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 4 |
| 825 | 154.04 | wind | 1.0 | 90 | > th | dose independent | rect. | 15 | 4 |
| 829 | 154.11 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 856 | 154.31 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 20 |
| 860 | 154.33 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 4 |
| 862 | 154.33 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 15 | 4 |
| 864 | 154.33 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 20 |
| 868 | 154.36 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 885 | 154.53 | wind | 3.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 896 | 154.63 | wind | 9.0 | 90 | < th | dose independent | rect. | 15 | 4 |
| 906 | 154.70 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 930 | 154.99 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 942 | 155.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 2 |
| 944 | 155.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 951 | 155.18 | wind | 1.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 962 | 155.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 964 | 155.28 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 967 | 155.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 981 | 155.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 988 | 155.43 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 20 |