Os03g0189300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0189300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.34 | 0.538 | 6.04 | 3.61 | 1.21 | -0.748 | 0.544 | -0.0597 | -0.00134 | 3.08 | 9.595 | 8 | -- | -- |
| 130.99 | 0.537 | 6.04 | 3.61 | 1.14 | -0.672 | 0.556 | -- | 0.00387 | 3.28 | 9.595 | 8 | -- | -- |
| 131.89 | 0.539 | 6.04 | 3.6 | 1.13 | -0.656 | -- | 0.118 | 0.0015 | 3.34 | 9.606 | 7 | -- | -- |
| 131.74 | 0.535 | 6.04 | 3.6 | 1.2 | -0.742 | -- | -- | -0.00289 | 3.08 | 9.3 | 4 | -- | -- |
| 182.41 | 0.632 | 6.04 | 3.63 | -- | -0.192 | -- | 0.23 | 0.0343 | -- | 8.64 | 3 | -- | -- |
| 140.67 | 0.556 | 6.02 | 3.59 | 0.936 | -- | 0.318 | -- | 0.0162 | 5.99 | -- | -- | -- | -- |
| 140.92 | 0.556 | 6.02 | 3.59 | 0.938 | -- | -- | -- | 0.0151 | 6.02 | -- | -- | -- | -- |
| 182.72 | 0.632 | 6.04 | 3.62 | -- | -0.193 | -- | -- | 0.0333 | -- | 8.17 | 3 | -- | -- |
| 467.51 | 1.01 | 6.12 | -- | 1.27 | -0.795 | -- | -- | -0.387 | 3.35 | 22.49 | 6 | -- | -- |
| 186.51 | 0.638 | 6.04 | 3.62 | -- | -- | -- | -- | 0.0364 | -- | -- | -- | -- | -- |
| 480.81 | 1.03 | 6.11 | -- | 0.992 | -- | -- | -- | -0.385 | 5.84 | -- | -- | -- | -- |
| 528.87 | 1.07 | 6.13 | -- | -- | -0.171 | -- | -- | -0.37 | -- | 6.719 | 2 | -- | -- |
| 531.88 | 1.08 | 6.13 | -- | -- | -- | -- | -- | -0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.78 | radiation | 20 | 30 | < th | dose independent | rect. | 13 | 16 |
| 3 | 124.57 | radiation | 40 | 30 | < th | dose dependent | rect. | 12 | 17 |
| 7 | 125.56 | radiation | 30 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 15 | 126.18 | radiation | 10 | 30 | < th | dose independent | rect. | 8 | 21 |
| 35 | 127.28 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 20 |
| 49 | 127.39 | humidity | 80 | 43200 | > th | dose dependent | sin | 5 | NA |
| 62 | 127.45 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 71 | 127.51 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 81 | 127.56 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 10 |
| 83 | 127.57 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 104 | 127.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 110 | 127.69 | humidity | 80 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 115 | 127.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 17 |
| 117 | 127.71 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 134 | 127.80 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 193 | 128.07 | humidity | 80 | 43200 | > th | dose dependent | sin | 16 | NA |
| 208 | 128.14 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 212 | 128.16 | humidity | 90 | 43200 | < th | dose independent | sin | 13 | NA |
| 221 | 128.19 | humidity | 90 | 43200 | < th | dose independent | sin | 8 | NA |
| 232 | 128.21 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 258 | 128.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 260 | 128.30 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 11 |
| 276 | 128.38 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 277 | 128.38 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 282 | 128.41 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 321 | 128.50 | humidity | 80 | 43200 | > th | dose independent | sin | 2 | NA |
| 322 | 128.50 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 355 | 128.59 | humidity | 80 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 356 | 128.60 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 366 | 128.62 | humidity | 90 | 43200 | > th | dose independent | sin | 11 | NA |
| 368 | 128.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 393 | 128.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 424 | 128.74 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 425 | 128.74 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 493 | 128.90 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 497 | 128.91 | humidity | 70 | 43200 | > th | dose dependent | sin | 2 | NA |
| 518 | 128.95 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 536 | 128.97 | temperature | 15 | 30 | > th | dose dependent | rect. | 24 | 5 |
| 553 | 129.00 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 607 | 129.11 | radiation | 10 | 10 | < th | dose dependent | rect. | 21 | 22 |
| 618 | 129.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 622 | 129.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 649 | 129.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 654 | 129.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 720 | 129.28 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 721 | 129.28 | humidity | 50 | 30 | > th | dose independent | rect. | 15 | 14 |
| 763 | 129.34 | radiation | 10 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 779 | 129.38 | humidity | 80 | 43200 | < th | dose independent | sin | 1 | NA |
| 810 | 129.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 833 | 129.45 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 844 | 129.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 867 | 129.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 886 | 129.54 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 909 | 129.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 924 | 129.59 | radiation | 40 | 1440 | < th | dose dependent | rect. | 1 | 4 |