BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0189300 Os03g0189300|AK069700
(477 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G40020.1 | chr4:18553453-18555300 REVERSE LENGTH=616 130 2e-30
AT1G65010.1 | chr1:24149543-24154024 FORWARD LENGTH=1346 60 4e-09
AT5G16730.1 | chr5:5497890-5500775 FORWARD LENGTH=854 51 1e-06
>AT4G40020.1 | chr4:18553453-18555300 REVERSE LENGTH=616
Length = 615
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 165/318 (51%), Gaps = 55/318 (17%)
Query: 86 IETLEAELDASRESEKRMLESLAMQTKQLEMTKIELEEARLENASLRETIQR-------- 137
I+ LEA +EK++L+S Q+++LE TK +EE+++E ASL+E I
Sbjct: 57 IKNLEA-------AEKKLLDSFKDQSRELEETKALVEESKVEIASLKEKIDTSYNSQDSS 109
Query: 138 -------------LEAIAVPVATTPRGRYD----------------RDYQRVHGELRMAL 168
+E++ + +T + + V EL+ A
Sbjct: 110 EEDEDDSSVQDFDIESLKTEMESTKESLAQAHEAAQASSLKVSELLEEMKSVKNELKSAT 169
Query: 169 VAEDKNKKAMEELVLALKEVNGELHTTRQLLARSQHEAETARLESDRLHVSLK--RKDDK 226
AE N+KAM++L LALKEV + T++ L + E E AR+ES + + RKD +
Sbjct: 170 DAEMTNEKAMDDLALALKEVATDCSQTKEKLVIVETELEAARIESQQWKDKYEEVRKDAE 229
Query: 227 LRALSEEVARLRADAEESFAAWRGKEAGFTSCMKSTESELAETRRENARLLES------- 279
L L RLR +AEES AW GKE+ F +C+K E E EN RLLE+
Sbjct: 230 L--LKNTSERLRIEAEESLLAWNGKESVFVTCIKRGEDEKNSLLDENNRLLEALVAAENL 287
Query: 280 QRSGRDEIAKLRDILRQAVKDTKVVKEALEEARGENAALKEMLGDKDTAIKCTKQELECL 339
+ ++E K+RDIL+QA+ + V KEA AR EN+ LK+ L DK+ ++ +E+E +
Sbjct: 288 SKKAKEENHKVRDILKQAINEANVAKEAAGIARAENSNLKDALLDKEEELQFALKEIERV 347
Query: 340 RVTEAAARDSVKELQSLL 357
+V EA A D++K+L+ +L
Sbjct: 348 KVNEAVANDNIKKLKKML 365
>AT1G65010.1 | chr1:24149543-24154024 FORWARD LENGTH=1346
Length = 1345
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 18/209 (8%)
Query: 163 ELRMALVAEDKNKKAMEELVLALKEVNGELHTTRQLLARSQHEAETARLESDRLHVSLKR 222
EL V E+K+KK ME L LAL+E + E + L Q E + + D L ++ K
Sbjct: 441 ELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKE 500
Query: 223 KDDKLRALSEE-----------VARLRADAEESFAAWRGKEAGFTSCMKSTESELAETRR 271
++K + E+ V ++ + E S A W KE C+K +E E + ++
Sbjct: 501 TNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLMGCVKKSEEENSSSQE 560
Query: 272 ENARLL----ESQRSG---RDEIAKLRDILRQAVKDTKVVKEALEEARGENAALKEMLGD 324
E +RL+ ES+ ++E A L++ L+ A + K ++E L EA+ E+ LKE L D
Sbjct: 561 EVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLD 620
Query: 325 KDTAIKCTKQELECLRVTEAAARDSVKEL 353
K+ +K E+ LR E + + ++EL
Sbjct: 621 KEEDLKNVTAEISSLREWEGSVLEKIEEL 649
>AT5G16730.1 | chr5:5497890-5500775 FORWARD LENGTH=854
Length = 853
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 177 AMEELVLALKEVNGELHTTRQ-LLARSQHEAETARLESDRLHVSLKRKDDKLRALSEE-- 233
AME L AL EV+ E ++ LL++ HE ET + D L + +K ++K + +E
Sbjct: 465 AMESLASALHEVSSEGRELKEKLLSQGDHEYET---QIDDLKLVIKATNEKYENMLDEAR 521
Query: 234 ---------VARLRADAEESFAAWRGKEAGFTSCMKSTESELAETRRENARLLESQRSGR 284
V + + E S W KEA + +K E ++A +E RL +
Sbjct: 522 HEIDVLVSAVEQTKKHFESSKKDWEMKEANLVNYVKKMEEDVASMGKEMNRLDNLLKRTE 581
Query: 285 DEI-------AKLRDILRQAVKDTKVVKEALEEARGENAALKEMLGDKDTAIKCTKQELE 337
+E A+ +D L++ ++ ++E L EA+ E+ LKE L DK+T + E E
Sbjct: 582 EEADAAWKKEAQTKDSLKEVEEEIVYLQETLGEAKAESMKLKENLLDKETEFQNVIHENE 641
Query: 338 CLRVTEAAARDSVKELQSLL 357
L+ E + ++EL LL
Sbjct: 642 DLKAKEDVSLKKIEELSKLL 661
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.126 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,028,449
Number of extensions: 361098
Number of successful extensions: 2157
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 2157
Number of HSP's successfully gapped: 36
Length of query: 477
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 375
Effective length of database: 8,310,137
Effective search space: 3116301375
Effective search space used: 3116301375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)