Os03g0187500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, cysteine-containing subtype containing protein.
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Os03g0187500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, cysteine-containing subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.75 | 0.372 | 10.1 | 0.254 | 0.488 | -0.672 | 0.861 | 0.453 | -0.301 | 3.53 | 20.5 | 725 | -- | -- |
| 63.4 | 0.371 | 10.1 | 0.236 | 0.483 | -0.732 | 0.933 | -- | -0.305 | 3.36 | 20.6 | 752 | -- | -- |
| 64.73 | 0.375 | 10.1 | 0.274 | 0.526 | -0.674 | -- | 0.546 | -0.297 | 3.91 | 20.51 | 831 | -- | -- |
| 65.52 | 0.377 | 10.1 | 0.176 | 0.519 | -0.752 | -- | -- | -0.312 | 3.73 | 20.6 | 835 | -- | -- |
| 77.87 | 0.411 | 10.1 | 0.261 | -- | -0.657 | -- | 0.458 | -0.279 | -- | 20.7 | 602 | -- | -- |
| 78.57 | 0.416 | 10.1 | -0.0984 | 0.489 | -- | 0.933 | -- | -0.478 | 4.04 | -- | -- | -- | -- |
| 80.62 | 0.42 | 10.1 | -0.109 | 0.51 | -- | -- | -- | -0.483 | 4.68 | -- | -- | -- | -- |
| 78.48 | 0.413 | 10.1 | 0.163 | -- | -0.693 | -- | -- | -0.308 | -- | 20.79 | 592 | -- | -- |
| 66.16 | 0.379 | 10.1 | -- | 0.521 | -0.692 | -- | -- | -0.346 | 3.87 | 20.5 | 831 | -- | -- |
| 94.41 | 0.454 | 10.1 | -0.0894 | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
| 80.93 | 0.421 | 10.1 | -- | 0.508 | -- | -- | -- | -0.471 | 4.68 | -- | -- | -- | -- |
| 79.09 | 0.414 | 10.1 | -- | -- | -0.651 | -- | -- | -0.334 | -- | 20.7 | 573 | -- | -- |
| 94.62 | 0.454 | 10.1 | -- | -- | -- | -- | -- | -0.46 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.59 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 7 |
| 20 | 58.33 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 45 | 59.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 56 | 59.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 4 |
| 73 | 59.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 96 | 60.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 103 | 60.09 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 126 | 60.31 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 154 | 60.65 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 200 | 61.09 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 282 | 61.72 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 283 | 61.73 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 289 | 61.76 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 18 |
| 300 | 61.83 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 324 | 61.95 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 329 | 61.98 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 17 |
| 352 | 62.11 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 360 | 62.15 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 5 |
| 446 | 62.56 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 23 |
| 603 | 63.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 607 | 63.25 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 638 | 63.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 644 | 63.42 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 647 | 63.43 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 652 | 63.44 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 654 | 63.45 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 661 | 63.49 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 665 | 63.51 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 678 | 63.53 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 692 | 63.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 713 | 63.71 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 725 | 63.74 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 726 | 63.75 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 729 | 63.76 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 732 | 63.77 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 745 | 63.80 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 766 | 63.93 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 791 | 64.02 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 815 | 64.11 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 1 |
| 823 | 64.14 | wind | 9 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 897 | 64.43 | wind | 9 | 4320 | > th | dose dependent | rect. | 15 | 14 |
| 927 | 64.54 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 23 |
| 944 | 64.60 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 23 |
| 947 | 64.62 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 968 | 64.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |