Os03g0178500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0178500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha/beta hydrolase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.62	(0.0304)	R²	:	0.666
β₁	:	-0.675	(0.111)	R²_dD	:	0.0297	R²_D	:	0.0261
β₂	:	3.41	(0.123)	R²_dC	:	1.35	R²_C	:	-0.774
β₃	:	-3	(0.107)	R²_dE	:	1.4	R²_E	:	-0.704
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.121	(0.065)	R²_dN8	:	0.00334	R²_N8	:	-0.00809
σ	:	0.569
deviance	:	149.36
__

_____

C
peak time of C	:	5.1
E
wheather	:	radiation
threshold	:	0.5897
memory length	:	220
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	sin
peak or start time of G	:	3.6
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
141.57	0.559	3.62	-0.679	3.78	-3.34	-3.11	2.5	-0.104	4.92	0.451	264	4.12	--
148.52	0.568	3.62	-0.613	3.5	-3.09	-0.802	--	-0.0789	5.11	0.6968	224	3.52	--
154.69	0.579	3.68	-0.55	3.28	-3.01	--	1.36	-0.12	5.08	0.76	218	3.69	--
149.36	0.569	3.62	-0.675	3.41	-3	--	--	-0.121	5.1	0.5897	220	3.6	--
230.88	0.712	3.66	-0.651	--	-1.67	--	1.09	-0.0433	--	12.58	8	8.05	--
193.92	0.653	3.61	-0.611	1.99	--	-1.42	--	-0.034	9.39	--	--	--	--
201.21	0.664	3.61	-0.662	2	--	--	--	-0.035	9.44	--	--	--	--
201.03	0.66	3.66	-0.654	--	-1.99	--	--	-0.023	--	62.79	3	8.57	--
162.1	0.593	3.61	--	3.44	-3.05	--	--	-0.0446	5.09	0.62	220	3.53	--
435.57	0.975	3.66	-0.674	--	--	--	--	-0.0286	--	--	--	--	--
212.76	0.682	3.59	--	2	--	--	--	0.0387	9.47	--	--	--	--
212.31	0.679	3.65	--	--	-1.98	--	--	0.0364	--	59.91	6	8.57	--
447.57	0.987	3.64	--	--	--	--	--	0.0462	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	140.12	temperature	10.0	270	> th	dose dependent	rect.	4	6
4	142.55	radiation	1.0	270	< th	dose dependent	sin	10	NA
8	143.15	temperature	10.0	10	> th	dose dependent	rect.	5	7
13	144.07	radiation	20.0	30	< th	dose dependent	sin	8	NA
15	145.12	wind	9.0	270	< th	dose dependent	rect.	4	6
16	145.35	radiation	1.0	270	< th	dose dependent	rect.	21	16
25	146.55	temperature	15.0	270	> th	dose independent	rect.	4	6
27	146.62	radiation	1.0	270	< th	dose independent	sin	10	NA
28	146.66	wind	7.0	270	< th	dose independent	rect.	4	6
30	146.74	radiation	1.0	270	> th	dose independent	sin	10	NA
37	147.14	precipitation	0.1	270	< th	dose independent	rect.	4	6
38	147.14	precipitation	0.1	270	< th	dose dependent	rect.	4	6
42	147.55	radiation	1.0	90	> th	dose independent	rect.	4	7
54	147.83	humidity	50.0	270	> th	dose independent	rect.	4	6
55	147.83	atmosphere	995.0	270	> th	dose independent	rect.	4	6
56	147.83	atmosphere	1015.0	270	< th	dose independent	rect.	4	6
57	147.83	temperature	10.0	270	> th	dose independent	rect.	10	18
60	148.00	wind	9.0	270	< th	dose independent	rect.	10	18
76	148.22	temperature	15.0	270	> th	dose independent	rect.	3	8
88	148.62	wind	7.0	270	< th	dose independent	rect.	3	8
89	148.67	radiation	40.0	270	< th	dose independent	rect.	14	9
91	148.72	wind	9.0	10	< th	dose dependent	rect.	5	7
120	149.41	radiation	1.0	270	< th	dose independent	rect.	21	16
122	149.49	precipitation	0.1	270	< th	dose independent	rect.	10	18
123	149.49	precipitation	0.1	270	< th	dose dependent	rect.	10	18
135	149.76	radiation	1.0	90	< th	dose independent	sin	7	NA
141	149.93	temperature	10.0	270	> th	dose independent	rect.	14	9
142	149.93	temperature	10.0	270	> th	dose independent	rect.	23	15
143	149.93	atmosphere	995.0	270	> th	dose independent	rect.	23	15
150	150.00	temperature	30.0	270	< th	dose independent	rect.	4	5
151	150.01	radiation	1.0	90	> th	dose independent	sin	7	NA
155	150.09	wind	9.0	270	< th	dose independent	rect.	23	15
160	150.22	radiation	40.0	270	< th	dose independent	rect.	4	5
174	150.50	precipitation	0.1	270	< th	dose independent	rect.	4	18
175	150.50	precipitation	0.1	270	< th	dose dependent	rect.	4	18
179	150.55	wind	9.0	270	< th	dose independent	rect.	14	9
188	150.78	temperature	15.0	270	> th	dose independent	rect.	4	18
199	150.96	precipitation	0.1	270	< th	dose independent	rect.	15	8
200	150.96	precipitation	0.1	270	< th	dose dependent	rect.	15	8
206	151.04	precipitation	0.1	270	< th	dose independent	rect.	17	16
208	151.04	precipitation	0.1	270	< th	dose dependent	rect.	17	16
210	151.07	atmosphere	995.0	270	> th	dose independent	rect.	10	18
213	151.13	wind	9.0	270	< th	dose independent	rect.	22	6
215	151.14	temperature	10.0	270	> th	dose independent	rect.	22	6
216	151.14	temperature	30.0	270	< th	dose independent	rect.	22	6
217	151.14	humidity	50.0	270	> th	dose independent	rect.	22	6
220	151.14	atmosphere	995.0	270	> th	dose independent	rect.	22	6
221	151.14	radiation	1.0	270	< th	dose independent	rect.	22	6
227	151.14	radiation	1.0	270	< th	dose dependent	rect.	22	6
236	151.26	wind	1.0	270	> th	dose independent	rect.	14	9
270	151.55	radiation	1.0	90	< th	dose independent	rect.	23	16
280	151.79	temperature	15.0	270	> th	dose independent	rect.	5	16
281	151.80	atmosphere	1015.0	270	< th	dose independent	rect.	23	15
283	151.83	wind	7.0	10	< th	dose independent	rect.	5	7
294	152.03	atmosphere	1015.0	270	< th	dose independent	rect.	4	18
297	152.05	radiation	1.0	270	< th	dose independent	rect.	21	8
299	152.05	precipitation	0.1	270	< th	dose independent	rect.	5	16
300	152.05	precipitation	0.1	270	< th	dose dependent	rect.	5	16
305	152.11	precipitation	0.1	270	< th	dose independent	rect.	22	6
306	152.11	precipitation	0.1	270	< th	dose dependent	rect.	22	6
310	152.20	wind	9.0	270	< th	dose independent	rect.	4	18
313	152.21	wind	9.0	270	< th	dose independent	rect.	21	8
314	152.21	temperature	10.0	270	> th	dose independent	rect.	9	8
315	152.21	atmosphere	1015.0	270	< th	dose independent	rect.	9	8
317	152.21	temperature	10.0	270	> th	dose independent	rect.	17	16
320	152.25	temperature	10.0	270	> th	dose independent	rect.	21	8
321	152.25	temperature	30.0	270	< th	dose independent	rect.	21	8
322	152.25	humidity	50.0	270	> th	dose independent	rect.	21	8
325	152.25	atmosphere	995.0	270	> th	dose independent	rect.	21	8
332	152.28	wind	9.0	270	< th	dose independent	rect.	17	16
342	152.43	radiation	1.0	270	< th	dose independent	rect.	21	10
348	152.51	wind	9.0	270	< th	dose independent	rect.	9	8
352	152.57	atmosphere	1015.0	270	< th	dose independent	rect.	5	16
357	152.61	humidity	50.0	270	> th	dose independent	rect.	17	16
360	152.66	radiation	40.0	270	< th	dose independent	rect.	17	16
362	152.68	atmosphere	995.0	270	> th	dose independent	rect.	17	16
366	152.71	precipitation	0.1	270	< th	dose independent	rect.	9	8
368	152.71	precipitation	0.1	270	< th	dose independent	rect.	23	16
369	152.71	precipitation	0.1	270	< th	dose dependent	rect.	9	8
370	152.71	precipitation	0.1	270	< th	dose dependent	rect.	23	16
380	152.82	humidity	50.0	270	> th	dose independent	rect.	23	15
408	153.19	humidity	50.0	10	> th	dose independent	rect.	5	7
422	153.47	temperature	20.0	10	> th	dose independent	rect.	5	7
426	153.57	humidity	90.0	90	< th	dose independent	rect.	6	5
429	153.60	wind	9.0	270	< th	dose independent	rect.	5	16
460	153.72	atmosphere	995.0	270	> th	dose independent	rect.	15	8
490	153.90	wind	1.0	270	> th	dose independent	rect.	9	8
526	153.99	humidity	50.0	270	> th	dose dependent	rect.	22	6
530	154.02	precipitation	0.1	270	< th	dose independent	rect.	21	8
531	154.02	precipitation	0.1	270	< th	dose dependent	rect.	21	8
534	154.10	precipitation	0.1	10	< th	dose independent	rect.	5	7
536	154.10	precipitation	0.1	10	< th	dose dependent	rect.	5	7
539	154.13	wind	9.0	10	< th	dose independent	rect.	12	17
549	154.27	atmosphere	995.0	270	> th	dose independent	rect.	4	18
556	154.36	wind	9.0	270	< th	dose dependent	rect.	22	6
564	154.48	atmosphere	995.0	270	> th	dose independent	rect.	9	8
574	154.58	atmosphere	1015.0	270	< th	dose independent	rect.	22	6
575	154.58	temperature	10.0	10	> th	dose independent	rect.	5	7
577	154.58	atmosphere	995.0	10	> th	dose independent	rect.	5	7
578	154.58	atmosphere	1015.0	10	< th	dose independent	rect.	5	7
579	154.58	temperature	10.0	10	> th	dose independent	rect.	12	17
587	154.69	atmosphere	995.0	270	> th	dose dependent	rect.	23	5
621	155.08	wind	1.0	90	> th	dose independent	rect.	11	18
659	155.29	atmosphere	1015.0	270	< th	dose independent	rect.	15	8
701	155.79	temperature	10.0	10	> th	dose dependent	rect.	5	19
731	156.14	radiation	1.0	30	> th	dose dependent	sin	10	NA
734	156.18	precipitation	0.1	10	< th	dose independent	rect.	12	17
737	156.18	precipitation	0.1	10	< th	dose dependent	rect.	12	17
749	156.40	atmosphere	995.0	270	> th	dose independent	rect.	5	16
774	156.61	temperature	10.0	270	> th	dose dependent	rect.	22	6
779	156.65	humidity	50.0	270	> th	dose dependent	rect.	23	4
788	156.71	radiation	10.0	10	< th	dose dependent	rect.	24	8
789	156.73	atmosphere	995.0	10	> th	dose independent	rect.	12	17
810	156.93	humidity	50.0	270	> th	dose independent	rect.	10	18
825	157.04	radiation	10.0	10	< th	dose dependent	rect.	24	6
865	157.38	atmosphere	1015.0	270	< th	dose independent	rect.	10	18
899	157.53	humidity	50.0	270	> th	dose dependent	rect.	4	6
917	157.64	radiation	40.0	270	< th	dose independent	rect.	4	19
922	157.73	humidity	50.0	270	> th	dose dependent	rect.	5	4
985	158.26	humidity	50.0	270	> th	dose independent	rect.	14	9