BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0178500 Os03g0178500|AK109678
(330 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09430.1 | chr5:2932162-2933362 FORWARD LENGTH=312 194 6e-50
AT4G39955.1 | chr4:18530573-18532088 FORWARD LENGTH=329 181 5e-46
AT1G17430.1 | chr1:5982310-5983919 FORWARD LENGTH=333 172 2e-43
AT1G72620.1 | chr1:27341079-27342401 FORWARD LENGTH=336 166 2e-41
AT5G21950.1 | chr5:7254067-7255866 REVERSE LENGTH=309 160 7e-40
AT4G33180.1 | chr4:16000282-16002055 FORWARD LENGTH=308 158 5e-39
AT1G78210.1 | chr1:29422820-29424294 REVERSE LENGTH=315 156 1e-38
AT2G18360.1 | chr2:7976848-7979221 REVERSE LENGTH=314 156 2e-38
AT4G36610.1 | chr4:17265545-17267274 REVERSE LENGTH=318 149 2e-36
>AT5G09430.1 | chr5:2932162-2933362 FORWARD LENGTH=312
Length = 311
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 153/247 (61%), Gaps = 5/247 (2%)
Query: 86 HGFGGDSKWTWARNLPALSRHFHVYAPDLLFFGAHSRSASPLRTVAFQARCAAEAMRLLG 145
HGFG ++ W + +L A + F+VY PDLLFFG S S P RT +FQARC M G
Sbjct: 67 HGFGANAMWQYGEHLRAFTGRFNVYVPDLLFFGLSSTS-EPNRTESFQARCLMRLMEAHG 125
Query: 146 VDRYDVVGISYGGFVAYRLAAVEGRDRVPRVVVMTSGVAATPGXXXXXXXXXXXXXXXS- 204
V R ++VGISYGGFV Y LAA + + V ++V+ +GV +
Sbjct: 126 VQRMNIVGISYGGFVGYSLAA-QFPENVEKLVLCCAGVCLEEKDMEDGLFKVPNLEEATG 184
Query: 205 -LLPETADGLRRLVRRSMHRPPPWMPDFVLDDFIKLMCVVQRKERAELLHELLKNGAGID 263
L+P+T + L+ L+R S +P +P F L DFI +MC +E+ +L+ +LK+ D
Sbjct: 185 ILIPQTPEKLKELIRFSFVKPIKGVPSFFLWDFIDVMCTEFVEEKRDLIKSILKDRRLSD 244
Query: 264 PLPVLTQKTLILWGDKDQVFPLDLGHRLQRHLGDVSRLEIIKDAGHALQLEGADQVNRFI 323
LP + QK+LI+WG++DQ+FPL+LG+RL+RH+G+ + + +IK AGHA+ LE + + + +
Sbjct: 245 -LPRIKQKSLIIWGEEDQIFPLELGYRLKRHIGESAEIVVIKKAGHAVNLEKSKEFVKHL 303
Query: 324 KSFLLDS 330
KSFL+DS
Sbjct: 304 KSFLIDS 310
>AT4G39955.1 | chr4:18530573-18532088 FORWARD LENGTH=329
Length = 328
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 146/245 (59%), Gaps = 6/245 (2%)
Query: 86 HGFGGDSKWTWARNLPALSRHFHVYAPDLLFFGAHSRSASPLRTVAFQARCAAEAMRLLG 145
HG G ++ W W R + F+VY PDL+FFG S + P R+ +FQA C +AM G
Sbjct: 56 HGIGANAMWQWDRFIDRFIPRFNVYVPDLIFFG-DSYTTRPDRSESFQATCVMKAMDAYG 114
Query: 146 VDRYDVVGISYGGFVAYRLAAVEGRDRVPRVVVMTSGVAATPGXXXXXXXXXXXXXXXS- 204
V V G+SYGGFVAY LAA + ++RV RVV++ +GVA +
Sbjct: 115 VRTMTVAGLSYGGFVAYSLAA-QFKERVDRVVLICAGVALEEKDSEDGMFKVKSPEEAAA 173
Query: 205 -LLPETADGLRRLVRRSMHRPPPWMPDFVLDDFIKLMCVVQRKERAELLHELLKNGAGID 263
L P++ LRRL++ S ++PP W+P D+I +MC +ER EL+ E L G
Sbjct: 174 VLFPQSPSMLRRLLQLSFYKPPIWIPSCFAMDYIHVMCKDYLQERKELV-EALHKGRRFA 232
Query: 264 PLPVLTQKTLILWGDKDQVFPLDLGHRLQRHLG-DVSRLEIIKDAGHALQLEGADQVNRF 322
LP +TQ TL++WG++DQVFP++L HRL+R+LG D ++L ++K GHA+ E ++ +
Sbjct: 233 NLPKITQPTLMIWGEEDQVFPVELAHRLKRYLGEDRAQLVLLKKTGHAINEEKPKEMYKH 292
Query: 323 IKSFL 327
+KSFL
Sbjct: 293 MKSFL 297
>AT1G17430.1 | chr1:5982310-5983919 FORWARD LENGTH=333
Length = 332
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 161/296 (54%), Gaps = 19/296 (6%)
Query: 46 HFLARLRIRPVHLRLPGTDATTVRVWCXX-XXXXXXXXXXXHGFGGDSKWTWARNLPALS 104
+FL +RPV + L + TTV W HG+GG+SKW + + LS
Sbjct: 45 YFLVFCDLRPVTVDLDDGE-TTVHFWISGHRRISRQNLVMLHGYGGNSKWQFVHQVSDLS 103
Query: 105 RHFHVYAPDLLFFGAHSRSASPLRTVAFQARCAAEAMRLLGVDR----YDVVGISYGGFV 160
+ F+++ PDL+FFG S S + R+V QAR ++ LG + ISYGGFV
Sbjct: 104 KSFNLFIPDLVFFGK-SYSKNRDRSVEIQARSVVGGLKKLGCVEGGGGISIYSISYGGFV 162
Query: 161 AYRLAAVEGRDRVPRVVVMTSGVAATPGXXXXXXXXXXXXXXXSLLPETADGLRRLVRRS 220
AY++A + V ++V+++SGV T L+P+T LR L++ S
Sbjct: 163 AYKMAEI-WPAMVEKLVIVSSGVGFTQQQKTAELKKHGGDCSKILVPKTPMDLRLLIKIS 221
Query: 221 MHRPPP---WMPDFVLDDFIKLMCVVQRKERAELLHELLKNGAGIDPLP---VLTQKTLI 274
M+ W+PDF L FI +M K R ELL EL KN + P V++QKTLI
Sbjct: 222 MNTGLTFVDWVPDFFLSQFIAVM---YEKNRQELL-ELAKNLLEREEEPELPVISQKTLI 277
Query: 275 LWGDKDQVFPLDLGHRLQRHLGDVSRLEIIKDAGHALQLEGADQVNRFIKSFLLDS 330
+WGDKD+VFPL+ +RLQRHL SRLEIIK+ GHA+ +E +N FI SF+L +
Sbjct: 278 VWGDKDKVFPLEHAYRLQRHLQS-SRLEIIKETGHAVNIEAPTTLNNFITSFVLSA 332
>AT1G72620.1 | chr1:27341079-27342401 FORWARD LENGTH=336
Length = 335
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 159/290 (54%), Gaps = 13/290 (4%)
Query: 46 HFLARLRIRPVHLRLPGTDATTVRVWCXXXXXXXX-XXXXXHGFGGDSKWTWARNLPALS 104
+FL +RP+ + L + TT+ W HG+GG+SKW + + LS
Sbjct: 49 YFLIFCDLRPITVDLNDGE-TTLHFWISGHRKINRPNLVMLHGYGGNSKWQFIHQVSDLS 107
Query: 105 RHFHVYAPDLLFFG-AHSRSASPLRTVAFQARCAAEAMRLLGVDRYD--VVGISYGGFVA 161
+ F+++ PDL+FFG ++SR+ RT+ FQAR ++ LG D V ISYGGFVA
Sbjct: 108 KSFNLFIPDLVFFGKSYSRNTD--RTIEFQARSIVGGLKRLGCGDGDLSVYSISYGGFVA 165
Query: 162 YRLAAVEGRDRVPRVVVMTSGVAATPGXXXXXXXXXXXXXXXSLLPETADGLRRLVRRSM 221
YR+A + + + ++V+++SGV T L+P LR LV+ SM
Sbjct: 166 YRIAKI-WPEMIEKLVIVSSGVGFTQQQKMTEMKKHGGDVSEILVPSNPRDLRLLVKVSM 224
Query: 222 H---RPPPWMPDFVLDDFIKLMCVVQRKERAELLHELLKNGAGIDPLPVLTQKTLILWGD 278
+ R W+PDF+L FI +M R+E +L LL+ + + +Q+TLI+WGD
Sbjct: 225 NTGIRFLDWVPDFILSQFIAVMYETNRQELVDLAKNLLEREEEPELFSI-SQRTLIVWGD 283
Query: 279 KDQVFPLDLGHRLQRHLGDVSRLEIIKDAGHALQLEGADQVNRFIKSFLL 328
KD VFPL+ G RLQRHL + S LE++K+ GH + +E +N I SF+L
Sbjct: 284 KDNVFPLEHGRRLQRHLPN-SSLEVLKEIGHGVNIEAPTTLNNLIISFVL 332
>AT5G21950.1 | chr5:7254067-7255866 REVERSE LENGTH=309
Length = 308
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 132/244 (54%), Gaps = 3/244 (1%)
Query: 86 HGFGGDSKWTWARNLPALSRHFHVYAPDLLFFGAHSRSASPLRTVAFQARCAAEAMRLLG 145
HGFG + W W+ + LS F +Y PDL+FFG S S R+ FQA C + M L
Sbjct: 61 HGFGPSAVWQWSHQVKPLSHFFRLYVPDLVFFGGSSSSGEN-RSEMFQALCMGKLMEKLE 119
Query: 146 VDRYDVVGISYGGFVAYRLAAVEGRDRVPRVVVMTSGVAATPGXXXXXXXXXXXXXXXS- 204
V+R+ VVG SYGGFVAY +A + ++V +VV+ +SGV
Sbjct: 120 VERFSVVGTSYGGFVAYNMAKM-FPEKVEKVVLASSGVNLRRSDNEAFIARAKCHRIKEV 178
Query: 205 LLPETADGLRRLVRRSMHRPPPWMPDFVLDDFIKLMCVVQRKERAELLHELLKNGAGIDP 264
+LP +A LRR + ++PDFVL+DF + M +R+E+AELL L
Sbjct: 179 MLPASATDLRRFSGMVSSKRLDYVPDFVLNDFCQKMYSEKREEKAELLEGLSIGKDDKTN 238
Query: 265 LPVLTQKTLILWGDKDQVFPLDLGHRLQRHLGDVSRLEIIKDAGHALQLEGADQVNRFIK 324
+ + Q +++WG++DQVFPL + H L+ LG + L++I+ H Q E + + N F+
Sbjct: 239 VSPIQQDVMLIWGEQDQVFPLKMAHDLKEMLGTKATLKVIQKTSHIPQTEKSKEFNGFVM 298
Query: 325 SFLL 328
SFLL
Sbjct: 299 SFLL 302
>AT4G33180.1 | chr4:16000282-16002055 FORWARD LENGTH=308
Length = 307
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 5/248 (2%)
Query: 86 HGFGGDSKWTWARNLPALS-RHFHVYAPDLLFFGAHSRSASPLRTVAFQARCAAEAMRLL 144
HGFG S W W R + A S F VY+PDL+FFG S S+S RT FQA C A+ M +
Sbjct: 62 HGFGPSSMWQWRRQMQAFSPSAFRVYSPDLVFFG-DSTSSSTNRTEVFQAECMAKLMAKI 120
Query: 145 GVDRYDVVGISYGGFVAYRLAAVEGRDRVPRVVVMTSGVAATPGXXXXXXXXXXXXXXXS 204
G+ +Y+V G SYGGFVAY +A + ++V +VV+ +SG+
Sbjct: 121 GIGKYNVAGTSYGGFVAYHMAKM-WPEKVEKVVIASSGINMRKCDGESLLQRSNCECIEK 179
Query: 205 -LLPETADGLRRLVR-RSMHRPPPWMPDFVLDDFIKLMCVVQRKERAELLHELLKNGAGI 262
+LP TA R L+ S R PD + +D I + RKE+ ELL + +
Sbjct: 180 VMLPSTATEFRTLMALASSWRLVRMFPDALWNDVINNLYKKNRKEKIELLKGVTFGRSEN 239
Query: 263 DPLPVLTQKTLILWGDKDQVFPLDLGHRLQRHLGDVSRLEIIKDAGHALQLEGADQVNRF 322
+ L+Q+ LI+WGDKDQ+FP+ + + L+ LGD ++LEII + H Q+E A + N
Sbjct: 240 LNIDSLSQEVLIVWGDKDQIFPVKMAYELKEILGDKTKLEIIDNTSHVPQIECAQEFNNI 299
Query: 323 IKSFLLDS 330
+ FL S
Sbjct: 300 VLRFLKGS 307
>AT1G78210.1 | chr1:29422820-29424294 REVERSE LENGTH=315
Length = 314
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 148/291 (50%), Gaps = 13/291 (4%)
Query: 48 LARLRIRPVHLRLPGTDATTVRVWCXXXXXXXX---XXXXXHGFGGDSKWTWARNLPALS 104
R +RPV + L D T V W HG G + W W LS
Sbjct: 19 FKRSGLRPVTIDL--KDGTVVNFWVSKTKPESKPKPNLLLIHGLGATAIWQWYDVARRLS 76
Query: 105 RHFHVYAPDLLFFGAHSRSASPLRTVAFQARCAAEAMRLLGVDRYDVVGISYGGFVAYRL 164
R+F++Y PDL+FFG S + P R+ FQA+ A+ V ++ +VG+SYGGFV YR+
Sbjct: 77 RYFNLYIPDLVFFGGSS-TTRPERSDIFQAQTLMRALEAQSVKKFSLVGLSYGGFVGYRM 135
Query: 165 AAVEGRDRVPRVVVMTSGVAATPGXXXXXXXXXXXXXXXS--LLPETADGLRRLVRRSMH 222
A++ D V +VV+ + V S L+PE+ LR L+ +
Sbjct: 136 ASMYA-DAVEKVVICCAAVCVEEKDMKAGVFKVSDLDEASKILVPESVKKLRELMGYIFY 194
Query: 223 RPP--PWMPDFVLDDFIK-LMCVVQRKERAELLHELLKNGAGIDPLPVLTQKTLILWGDK 279
+P +P +L DFI+ + +E+ EL+ + K+ I +P L Q TLI+WG+
Sbjct: 195 KPALARLVPTCLLHDFIEHALTRDNMEEKRELIKAIPKDRI-ISEIPKLKQPTLIIWGEH 253
Query: 280 DQVFPLDLGHRLQRHLGDVSRLEIIKDAGHALQLEGADQVNRFIKSFLLDS 330
DQVFPL++G RL++H+GD +L IIK GH E + + +KSFLL++
Sbjct: 254 DQVFPLEMGKRLEKHVGDNGKLVIIKRTGHIFNFEKPKKFIKLLKSFLLET 304
>AT2G18360.1 | chr2:7976848-7979221 REVERSE LENGTH=314
Length = 313
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 136/243 (55%), Gaps = 6/243 (2%)
Query: 86 HGFGGDSKWTWARNLPALSRHFHVYAPDLLFFGAHSRSASPLRTVAFQARCAAEAMRLLG 145
HGF + TW + +L++ + VY PDLLFFG S S + R+ AFQA C +++R+LG
Sbjct: 69 HGFAAEGIVTWQFQVGSLAKKYSVYIPDLLFFGG-SYSDNADRSPAFQAHCLVKSLRILG 127
Query: 146 VDRYDVVGISYGGFVAYRLAAVEGRDRVPRVVVMTSGVAATPGXXXXXXXXXXXXXXXSL 205
++++ +VG SYGG VA+++A E + V +VV S +A T L
Sbjct: 128 IEKFTLVGFSYGGMVAFKIAE-EYPEMVQAMVVSGSILAMTDTISESNLNQLGFKSSADL 186
Query: 206 L-PETADGLRRLVRRSMHRPPPWMPDFVLDDFIKLMCVVQRKERAELLHELLKNGAGIDP 264
L P + GL+ L ++H+P W P + DFI++M + RKERAELL L+ + +
Sbjct: 187 LLPTSVKGLKTLFTLAVHKPM-WFPKRLFKDFIEVM-ITNRKERAELLEALVISNKDVT- 243
Query: 265 LPVLTQKTLILWGDKDQVFPLDLGHRLQRHLGDVSRLEIIKDAGHALQLEGADQVNRFIK 324
+P QK +LWG+ DQ+F L+ ++ LG+ + +E IK AGH LE NR +K
Sbjct: 244 IPRFQQKIHLLWGESDQIFNLEFAKSMKEQLGENATMESIKKAGHLAHLERPCVYNRRLK 303
Query: 325 SFL 327
FL
Sbjct: 304 KFL 306
>AT4G36610.1 | chr4:17265545-17267274 REVERSE LENGTH=318
Length = 317
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 8/244 (3%)
Query: 86 HGFGGDSKWTWARNLPALSRHFHVYAPDLLFFGAHSRSASPLRTVAFQARCAAEAMRLLG 145
HGF G+ TW + ALS+ + VY PDLLFFG S + + R+ AFQA C + +R+LG
Sbjct: 67 HGFAGEGIVTWQFQVGALSKKYSVYIPDLLFFGG-SYTDNSDRSPAFQADCLVKGLRILG 125
Query: 146 VDRYDVVGISYGGFVAYRLAAVEGRDRVPRVVVMTSGVAATPGXXXXXXXXXXXXXXXS- 204
VD++ VG SYGG VA+++A E + R +V++ + +
Sbjct: 126 VDKFVPVGFSYGGMVAFKIA--EAYPDMVRAIVVSGSIPTMTDTINEASLNRLGFSSSTD 183
Query: 205 -LLPETADGLRRLVRRSMHRPPPWMPDFVLDDFIKLMCVVQRKERAELLHELLKNGAGID 263
LLP + GL+ L ++H+P W P + D+I++M RKERAELL ++ +
Sbjct: 184 LLLPTSVTGLKALFTIAVHKPL-WFPKRLFKDYIEVM-FNNRKERAELLEAVVVSNKEAQ 241
Query: 264 PLPVLTQKTLILWGDKDQVFPLDLGHRLQRHLGDVSRLEIIKDAGHALQLEGADQVNRFI 323
+P +K LWG+ DQ+F L+L ++ +G+ + +E IK AGH +QLE NR +
Sbjct: 242 -IPHFPRKIHFLWGESDQIFDLELARDMKEQIGENATIESIKKAGHLVQLERPCVYNRRL 300
Query: 324 KSFL 327
K FL
Sbjct: 301 KKFL 304
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.141 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,640,739
Number of extensions: 211767
Number of successful extensions: 570
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 9
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)