Os03g0157300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function Cys-rich family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0157300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein of unknown function Cys-rich family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.93 | 0.618 | 8.57 | -2.15 | 0.908 | 0.282 | 0.621 | 6.81 | -0.769 | 2.35 | 29.85 | 1166 | -- | -- |
| 175.53 | 0.617 | 8.69 | -3.17 | 0.927 | 1.02 | 0.523 | -- | -0.762 | 2.4 | 30.44 | 1176 | -- | -- |
| 174.29 | 0.615 | 8.56 | -2.09 | 0.91 | 0.243 | -- | 7.24 | -0.771 | 2.23 | 29.89 | 1165 | -- | -- |
| 176.54 | 0.619 | 8.71 | -3.29 | 0.909 | 1.06 | -- | -- | -0.787 | 2.28 | 29.67 | 1178 | -- | -- |
| 221.51 | 0.693 | 8.55 | -2.07 | -- | 0.423 | -- | 7.31 | -0.712 | -- | 29.54 | 1161 | -- | -- |
| 225.62 | 0.704 | 8.75 | -3 | 1.07 | -- | 0.922 | -- | -0.97 | 2.21 | -- | -- | -- | -- |
| 228.73 | 0.708 | 8.75 | -3.03 | 1.07 | -- | -- | -- | -0.975 | 2.09 | -- | -- | -- | -- |
| 220.75 | 0.692 | 8.71 | -3.4 | -- | 1.44 | -- | -- | -0.955 | -- | 26.23 | 1147 | -- | -- |
| 452.2 | 0.99 | 8.63 | -- | 0.885 | 0.634 | -- | -- | -0.53 | 2.29 | 30.5 | 1136 | -- | -- |
| 297.28 | 0.806 | 8.74 | -2.98 | -- | -- | -- | -- | -0.95 | -- | -- | -- | -- | -- |
| 469.94 | 1.01 | 8.67 | -- | 1.01 | -- | -- | -- | -0.638 | 2.02 | -- | -- | -- | -- |
| 500.54 | 1.04 | 8.63 | -- | -- | 0.791 | -- | -- | -0.458 | -- | 31.2 | 1113 | -- | -- |
| 531.62 | 1.08 | 8.66 | -- | -- | -- | -- | -- | -0.619 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.49 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 7 | 174.09 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 19 | 174.86 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 21 | 175.01 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 25 | 175.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 26 | 175.81 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 29 | 176.04 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 39 | 176.79 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 45 | 177.19 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 46 | 177.21 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 51 | 177.38 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 66 | 177.39 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 73 | 177.45 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 74 | 177.46 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 79 | 177.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 81 | 177.52 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 92 | 177.57 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 95 | 177.58 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 112 | 177.61 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 156 | 177.68 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 157 | 177.68 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 164 | 177.69 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 198 | 177.76 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 201 | 177.76 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 210 | 177.78 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 215 | 177.80 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 305 | 177.80 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 319 | 177.83 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 320 | 177.83 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 378 | 177.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 394 | 177.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 429 | 178.06 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 439 | 178.10 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 457 | 178.12 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 482 | 178.21 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 488 | 178.23 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 490 | 178.24 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 497 | 178.27 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 500 | 178.29 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 504 | 178.33 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 509 | 178.36 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 514 | 178.36 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 532 | 178.38 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 533 | 178.38 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 540 | 178.41 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 605 | 178.59 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 607 | 178.60 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 608 | 178.60 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 618 | 178.62 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 619 | 178.62 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 649 | 178.68 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 673 | 178.69 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 676 | 178.70 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 699 | 178.72 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 712 | 178.73 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 733 | 178.75 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 735 | 178.75 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 777 | 178.79 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 790 | 178.80 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 806 | 178.81 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 810 | 178.81 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 811 | 178.81 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 841 | 178.82 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 876 | 178.83 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 877 | 178.83 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 935 | 178.86 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 945 | 178.87 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 946 | 178.87 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 8 | 7 |