Os03g0156700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : High-affinity nickel-transporter family protein.
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Os03g0156700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : High-affinity nickel-transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.4 | 0.365 | 10.2 | 0.691 | 2.36 | 1.41 | 0.75 | -0.581 | 0.144 | 7.18 | 28.15 | 139 | -- | -- |
| 60.87 | 0.363 | 10.2 | 0.608 | 2.35 | 1.43 | 0.719 | -- | 0.13 | 7.16 | 27.93 | 155 | -- | -- |
| 61.87 | 0.366 | 10.2 | 0.686 | 2.36 | 1.4 | -- | -0.493 | 0.136 | 7.14 | 28.22 | 140 | -- | -- |
| 62.17 | 0.367 | 10.2 | 0.611 | 2.34 | 1.42 | -- | -- | 0.12 | 7.16 | 28.14 | 156 | -- | -- |
| 259.86 | 0.751 | 10.2 | 1.03 | -- | 3.48 | -- | 0.0629 | 0.352 | -- | 35.1 | 414 | -- | -- |
| 88.85 | 0.442 | 10.3 | 0.236 | 2.6 | -- | 0.618 | -- | -0.183 | 6.65 | -- | -- | -- | -- |
| 89.8 | 0.444 | 10.3 | 0.245 | 2.6 | -- | -- | -- | -0.185 | 6.62 | -- | -- | -- | -- |
| 259.86 | 0.751 | 10.2 | 1.04 | -- | 3.48 | -- | -- | 0.356 | -- | 54.2 | 414 | -- | -- |
| 70.97 | 0.392 | 10.2 | -- | 2.42 | 1.17 | -- | -- | 0.027 | 6.95 | 27.64 | 175 | -- | -- |
| 443.15 | 0.984 | 10.3 | 0.307 | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
| 91.38 | 0.447 | 10.3 | -- | 2.61 | -- | -- | -- | -0.212 | 6.62 | -- | -- | -- | -- |
| 286.54 | 0.788 | 10.3 | -- | -- | 3.13 | -- | -- | 0.198 | -- | 61.64 | 409 | -- | -- |
| 445.64 | 0.985 | 10.3 | -- | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 2 | 59.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 8 | 60.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 17 | 61.52 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 21 | 61.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 28 | 61.79 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 35 | 61.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 70 | 62.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 76 | 62.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 157 | 63.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 198 | 64.00 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 225 | 64.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 301 | 64.93 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 361 | 65.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 447 | 65.95 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 464 | 66.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 479 | 66.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 564 | 66.58 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 631 | 67.08 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 649 | 67.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 669 | 67.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 901 | 68.27 | temperature | 25 | 1440 | < th | dose dependent | sin | 3 | NA |
| 929 | 68.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 988 | 68.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |