BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0156700 Os03g0156700|AK108804
(356 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35080.3 | chr4:16698384-16700012 FORWARD LENGTH=390 317 6e-87
AT2G16800.1 | chr2:7285824-7287188 FORWARD LENGTH=373 314 4e-86
>AT4G35080.3 | chr4:16698384-16700012 FORWARD LENGTH=390
Length = 389
Score = 317 bits (812), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 159/244 (65%), Positives = 190/244 (77%), Gaps = 8/244 (3%)
Query: 113 ASVQSITKTGGLFTSEILSSGWAGFIAGCLHTLSGPDHLVALAPLSIGRSRLESGLVGAL 172
AS Q+ K+G L +S W GF+AGCLHTLSGPDHL ALAPLSIGRS++ES VGAL
Sbjct: 154 ASFQTAAKSGWL------TSAWTGFLAGCLHTLSGPDHLAALAPLSIGRSKMESAAVGAL 207
Query: 173 WGCGHDAGQVIFGXXXXXXKDRLHIEILRTWGTRVVXXXXXXXXXXXXREATEVQESSLA 232
WGCGHDAGQVIFG KDRLHIE+L+TWGTR+V +EA+E+ E +A
Sbjct: 208 WGCGHDAGQVIFGLLFLLLKDRLHIEVLQTWGTRIVGLTLVIIGAMGIKEASEIPEPCVA 267
Query: 233 LEGVDCNITSSEPLQTPAAPRKKKVGFATFATGVVHGLQPDALLMVLPSLALPSRFAGAA 292
LE D ++ S+E P P+KKK+GFATFATGVVHGLQPDAL++VLP+LALPSR AG+A
Sbjct: 268 LE-TDISMVSTEKEALPL-PKKKKIGFATFATGVVHGLQPDALMIVLPALALPSRLAGSA 325
Query: 293 FLGMFLMGTVFSMGSYTAFVGSCSEALKEKVPRITEKLTWAASLVAICMGIALLVGQFFG 352
FL MFL+GTV +MGSYTAF+GSCSEALKEKVPRITEKLTW +SLVAI +G+ +++ FFG
Sbjct: 326 FLIMFLVGTVIAMGSYTAFIGSCSEALKEKVPRITEKLTWVSSLVAIGLGLGIVISPFFG 385
Query: 353 FSLY 356
FSLY
Sbjct: 386 FSLY 389
>AT2G16800.1 | chr2:7285824-7287188 FORWARD LENGTH=373
Length = 372
Score = 314 bits (805), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 166/275 (60%), Positives = 200/275 (72%), Gaps = 16/275 (5%)
Query: 90 AALFLLVALVTGTLQSSIPYP-AHASVQSITKTGG-------LFTSEILSSGWAGFIAGC 141
A + +LV+ + L + I P A AS Q+ T +GG L +E+L+S W GF AGC
Sbjct: 106 AGMVILVSAIAALLLNPILVPPAFASFQTATNSGGAAVVGGKLLRTEVLTSAWTGFFAGC 165
Query: 142 LHTLSGPDHLVALAPLSIGRSRLESGLVGALWGCGHDAGQVIFGXXXXXXKDRLHIEILR 201
LHTLSGPDHL ALAPLSIGR+R+ES VGALWGCGHDAGQ+IFG KDRLHIE++R
Sbjct: 166 LHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQLIFGLLFLLLKDRLHIEVIR 225
Query: 202 TWGTRVVXXXXXXXXXXXXREATEVQESSLALEGVDCNITSSEPLQTPAAPRKKKVGFAT 261
TWGTRVV +EA+E+ E C +T + +KKK+GFAT
Sbjct: 226 TWGTRVVGLTLLVIGAMGIKEASEMPE--------PCVVTLENGETDEKSLKKKKIGFAT 277
Query: 262 FATGVVHGLQPDALLMVLPSLALPSRFAGAAFLGMFLMGTVFSMGSYTAFVGSCSEALKE 321
FATG+VHGLQPDAL+MVLP+LALPSR AGA+FL MFL+GTV +MGSYT F+GSCSEALKE
Sbjct: 278 FATGIVHGLQPDALMMVLPALALPSRIAGASFLIMFLIGTVIAMGSYTVFIGSCSEALKE 337
Query: 322 KVPRITEKLTWAASLVAICMGIALLVGQFFGFSLY 356
KVPRITEKLTWA+SLVAI +G+A++V QFFGFSLY
Sbjct: 338 KVPRITEKLTWASSLVAIGLGLAIIVSQFFGFSLY 372
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,936,971
Number of extensions: 198788
Number of successful extensions: 382
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,364,969
Effective search space: 2141432064
Effective search space used: 2141432064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)