Os03g0154000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aromatic-ring hydroxylase family protein.
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Os03g0154000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aromatic-ring hydroxylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.91 | 0.538 | 8.26 | 2.33 | 0.428 | -2.16 | -1.51 | -0.374 | 0.795 | 15.2 | 0.8257 | 4437 | -- | -- |
| 130.69 | 0.532 | 8.24 | 2.28 | 0.421 | -2.1 | -1.46 | -- | 0.831 | 15.3 | 0.6412 | 4447 | -- | -- |
| 136.83 | 0.545 | 8.25 | 2.24 | 0.448 | -2.05 | -- | -0.0781 | 0.82 | 14.5 | 0.5414 | 4435 | -- | -- |
| 136.71 | 0.545 | 8.27 | 2.25 | 0.44 | -2.07 | -- | -- | 0.802 | 14.5 | 0.5501 | 4435 | -- | -- |
| 139.62 | 0.55 | 8.28 | 2.14 | -- | -2.28 | -- | 0.333 | 0.766 | -- | 0.6 | 4574 | -- | -- |
| 203.53 | 0.669 | 8.18 | 2.95 | 0.702 | -- | -1.29 | -- | 1.17 | 14.2 | -- | -- | -- | -- |
| 209.42 | 0.678 | 8.18 | 2.91 | 0.697 | -- | -- | -- | 1.16 | 13.8 | -- | -- | -- | -- |
| 139.92 | 0.551 | 8.27 | 2.19 | -- | -2.35 | -- | -- | 0.786 | -- | 0.5648 | 4558 | -- | -- |
| 166.24 | 0.6 | 8.34 | -- | 0.584 | -2.46 | -- | -- | 0.275 | 13.6 | 0.53 | 39002 | -- | -- |
| 238.9 | 0.722 | 8.19 | 2.88 | -- | -- | -- | -- | 1.14 | -- | -- | -- | -- | -- |
| 432.24 | 0.973 | 8.26 | -- | 0.644 | -- | -- | -- | 0.837 | 13.7 | -- | -- | -- | -- |
| 184.54 | 0.633 | 8.39 | -- | -- | -2.56 | -- | -- | 0.161 | -- | 0.009999 | 46557 | -- | -- |
| 457.55 | 0.998 | 8.26 | -- | -- | -- | -- | -- | 0.825 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 2 | 121.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 5 | 121.60 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 12 | 122.14 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 13 | 122.29 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 19 | 122.78 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 26 | 123.06 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 34 | 123.46 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 47 | 123.98 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 53 | 124.11 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 62 | 124.26 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 72 | 124.37 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 73 | 124.37 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 75 | 124.38 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 77 | 124.40 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 85 | 124.44 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 88 | 124.46 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 92 | 124.49 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 95 | 124.50 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 102 | 124.54 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 105 | 124.56 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 113 | 124.59 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 124 | 124.65 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 133 | 124.71 | wind | 7 | 43200 | > th | dose independent | sin | 20 | NA |
| 137 | 124.73 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 13 |
| 138 | 124.73 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 141 | 124.75 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 145 | 124.75 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 157 | 124.77 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 161 | 124.77 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 162 | 124.78 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 164 | 124.78 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 167 | 124.79 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 183 | 124.84 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 189 | 124.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 195 | 124.91 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 225 | 124.98 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 232 | 125.01 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 281 | 125.11 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 308 | 125.16 | humidity | 60 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 323 | 125.20 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 324 | 125.21 | radiation | 20 | 43200 | < th | dose independent | sin | 8 | NA |
| 329 | 125.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 21 |
| 334 | 125.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 380 | 125.32 | humidity | 60 | 43200 | < th | dose independent | sin | 17 | NA |
| 401 | 125.33 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 404 | 125.34 | humidity | 60 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 428 | 125.37 | humidity | 60 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 456 | 125.44 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 471 | 125.47 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 487 | 125.49 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 490 | 125.50 | humidity | 60 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 515 | 125.53 | humidity | 60 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 552 | 125.58 | humidity | 60 | 43200 | > th | dose independent | rect. | 10 | 17 |
| 558 | 125.59 | humidity | 60 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 573 | 125.62 | humidity | 60 | 43200 | > th | dose independent | sin | 18 | NA |
| 666 | 125.73 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 758 | 125.87 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 853 | 125.94 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 12 |
| 854 | 125.94 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 14 |
| 903 | 125.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 931 | 126.03 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 22 |