BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0154000 Os03g0154000|AK103088
(416 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G38540.1 | chr4:18023187-18024827 FORWARD LENGTH=408 328 4e-90
AT5G05320.1 | chr5:1575093-1576679 REVERSE LENGTH=407 313 1e-85
AT4G15760.1 | chr4:8972785-8974548 REVERSE LENGTH=423 214 5e-56
AT2G35660.1 | chr2:14988499-14990320 FORWARD LENGTH=440 203 1e-52
AT2G29720.1 | chr2:12700592-12702289 REVERSE LENGTH=428 196 2e-50
AT4G15765.1 | chr4:8975783-8977211 REVERSE LENGTH=272 97 2e-20
>AT4G38540.1 | chr4:18023187-18024827 FORWARD LENGTH=408
Length = 407
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/411 (40%), Positives = 241/411 (58%), Gaps = 11/411 (2%)
Query: 4 EQADGREIVIXXXXXXXXXXXXXXHRKGLRSVVLESSPTLRTSGLAFITWTNAFRALDAL 63
E+ +I+I HR G+RS+VLESS TLR +G AF TW NA++A++AL
Sbjct: 2 EEEGSPDIIIVGAGISGLSTAVGLHRLGIRSMVLESSETLRATGFAFTTWFNAWKAMEAL 61
Query: 64 GVGDKMRSQHQQIQRLNVMSSATGEIVQEIDLRAQGKRGTHEARCVSRTXXXXXXXXXXP 123
GV +RS H +++ V + + G E+ + +E+RCV R P
Sbjct: 62 GVSQHIRSLHDRLEGWVVGTISAGTPPTEMLFPESEE---YESRCVQRKLLLEALAGELP 118
Query: 124 RGTIRYSSKIVSIEEDGNAKILHLSDGSTLRAKVLIGCDGINSVVARWLGLAKPSDSGHT 183
TIR+SSK+V IE G K +HLSDG+ L+ KVL+GCDG+ SVV +WLG P+ +
Sbjct: 119 EETIRFSSKVVHIELSGCYKKVHLSDGTILKTKVLVGCDGVYSVVGKWLGFKNPATTARL 178
Query: 184 ATRGRAKYPDGHGFEPRFLQLVGQGFRAGMVPCNDTDVYWFFTWXXXXXXXXXXXXXAAT 243
A RG +P+GHGF RF Q G G R+G +PC+ VYWF T
Sbjct: 179 AIRGLTHFPEGHGFGKRFFQFYGDGVRSGFIPCDHNTVYWFLT--HTSTDIDEETNSEIL 236
Query: 244 KQFVLTKLRSTNVPPQVLEAVERSEMNDVLAAPLRFRSPLSLPFASISKGNVCVAGDALH 303
K+FVL K++ ++P + VE ++++ ++ + L++R P L +++I+K NVCVAGDALH
Sbjct: 237 KEFVLNKIK--DLPENIKNVVETTDLDSMVMSQLKYRPPWELLWSNITKDNVCVAGDALH 294
Query: 304 PTTPDLAQGACTALEDAVVLARCLGEALLLRT----GDCAAEESHRVVEAALRRYADARR 359
P TPD+ QG C+A+ED V+LARCLGEA+ ++ + EE ++ +E L++YA R+
Sbjct: 295 PMTPDIGQGGCSAMEDGVILARCLGEAIKAKSLKGETEENEEEGYKRIEEGLKKYAGERK 354
Query: 360 WRSAQLTGASYAVGFVQQSDHPAVGFLRDKLLSGVLAKTLLMMPDYDCGTL 410
WRS L +Y VGF+QQS + RD+ LS L++ LL +DCG+L
Sbjct: 355 WRSIDLITTAYTVGFIQQSRGKWMNMFRDRFLSSYLSRMLLKKSHFDCGSL 405
>AT5G05320.1 | chr5:1575093-1576679 REVERSE LENGTH=407
Length = 406
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 162/411 (39%), Positives = 233/411 (56%), Gaps = 11/411 (2%)
Query: 4 EQADGREIVIXXXXXXXXXXXXXXHRKGLRSVVLESSPTLRTSGLAFITWTNAFRALDAL 63
E ++I+I HR G+RS+VLESS LR +G A + NA++A++AL
Sbjct: 2 EAESTQDIIIVGAGISGLATALGLHRLGIRSIVLESSEQLRATGFALSLYFNAWKAMEAL 61
Query: 64 GVGDKMRSQHQQIQRLNVMSSATGEIVQEIDLRAQGKRGTHEARCVSRTXXXXXXXXXXP 123
G+ +RS + Q V + G+ +E+ + +E RCV R P
Sbjct: 62 GISQHIRSLGDRFQGWVVRPISAGDPPKEMLFPESEE---YEVRCVQRKLLLDALAGELP 118
Query: 124 RGTIRYSSKIVSIEEDGNAKILHLSDGSTLRAKVLIGCDGINSVVARWLGLAKPSDSGHT 183
+GTIR+SSK+V IE G+ K++HLSDG+ L+ KVL+GCDG+ SVV +WLG P +
Sbjct: 119 QGTIRFSSKLVHIELSGHYKMVHLSDGTILKTKVLVGCDGVKSVVGKWLGFKNPVKTSRV 178
Query: 184 ATRGRAKYPDGHGFEPRFLQLVGQGFRAGMVPCNDTDVYWFFTWXXXXXXXXXXXXXAAT 243
A RG A + GH RF Q G G R+G + C+ VYWF T
Sbjct: 179 AIRGIAHFQTGHELGRRFFQFYGNGVRSGFISCDQNTVYWFLT---HTSTDLDKKNHQKI 235
Query: 244 KQFVLTKLRSTNVPPQVLEAVERSEMNDVLAAPLRFRSPLSLPFASISKGNVCVAGDALH 303
KQFVLTK++ ++P + +E ++++ ++ PL +R P L +A+I+K NVCVAGDALH
Sbjct: 236 KQFVLTKIK--DLPDNIKSILETTDLDSLVMNPLMYRPPWELLWANIAKDNVCVAGDALH 293
Query: 304 PTTPDLAQGACTALEDAVVLARCLGEALLLRTGDCAAE---ESHRVVEAALRRYADARRW 360
P TPD+ QG C+A+ED V+LARCLGEA+ + E ES+R +E L++YA +R+W
Sbjct: 294 PMTPDIGQGGCSAMEDGVILARCLGEAMKAKNMKGETEDENESYRRIEDGLKKYAGSRKW 353
Query: 361 RSAQLTGASYAVGFVQQSDHPAVGFLRDKLLSGVLAKTLLMMPDYDCGTLS 411
RS L SY VGF+QQS + RDK +S L+ + ++CG LS
Sbjct: 354 RSIDLITTSYTVGFIQQSRGKWMTLFRDKFMSSFLSWLRVKKSHFNCGRLS 404
>AT4G15760.1 | chr4:8972785-8974548 REVERSE LENGTH=423
Length = 422
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 189/388 (48%), Gaps = 18/388 (4%)
Query: 28 HRKGLRSVVLESSPTLRTSGLAFITWTNAFRALDALGVGDKMRSQHQQIQRLNVMSSATG 87
HRKG++SVVLE + +R+ G T +N +RALD LGVGD++R I + M G
Sbjct: 48 HRKGIKSVVLERAEKVRSEGAGIGTLSNGWRALDQLGVGDRLRLNSSLIHKARTMLIENG 107
Query: 88 ---EIVQEIDLRAQGKRGTHEARCVSRTXXXXXXXXXXPRGTIRYSSKIVSIEEDGNA-- 142
E V I EARC+ R P+GTIR+ S IVSIE+D
Sbjct: 108 KKREFVSNI---------VDEARCIKRNDLVEALSDALPKGTIRFGSHIVSIEQDKTTLF 158
Query: 143 KILHLSDGSTLRAKVLIGCDGINSVVARWLGLAKPSDSGHTATRGRAKYPDGHGFEPRFL 202
++HL++G++++AKVLIGCDG NS+V+ +L L A RG KYP+GHGF L
Sbjct: 159 PVVHLANGNSIKAKVLIGCDGANSIVSDYLQLNPKKAFACRAVRGFTKYPNGHGFPQEVL 218
Query: 203 QLVGQGFRAGMVPCNDTDVYWFFTWXXXXXXXXXXXXXAATKQFVLTKLRSTNVPPQVLE 262
++ G +P D V+WF A L + + ++ E
Sbjct: 219 RIKQGNVLIGRLPLTDNQVFWFLVHMQDNNHNGKDQESIAN----LCRKWADDLSEDWKE 274
Query: 263 AVERSEMNDVLAAPLRFRSPLSLPFASISKGNVCVAGDALHPTTPDLAQGACTALEDAVV 322
V+ + + LR+R+P + +G V VAGDA+H P LAQG ALEDAVV
Sbjct: 275 MVKICNVESLTLTHLRYRAPSEIMLGKFRRGTVTVAGDAMHVMGPFLAQGGSAALEDAVV 334
Query: 323 LARCLGEALLLRTGDCAAEESHRVVEAALRRYADARRWRSAQLTGASYAVGFVQQSDHPA 382
LARCL + GD + S + +E A+ Y D RR R L+ +Y G Q+
Sbjct: 335 LARCLARKVGPDHGDLLKDCSMKNIEEAIDEYVDERRMRLLGLSVQTYLTGRSLQTSSKV 394
Query: 383 VGFLRDKLLSGVLAKTLLMMPDYDCGTL 410
+ + LL + + + YDCG L
Sbjct: 395 LRLMFIALLLLLFGRDQIRHTRYDCGRL 422
>AT2G35660.1 | chr2:14988499-14990320 FORWARD LENGTH=440
Length = 439
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 200/394 (50%), Gaps = 28/394 (7%)
Query: 28 HRKGLRSVVLESSPTLRTSGLAFITWTNAFRALDALGVGDKMRSQHQQIQRLNVMSSATG 87
HR G+RSVVLE + +LRT G + + N +R LDA+ VG ++R+Q +I+ + V+ G
Sbjct: 64 HRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGM-VVKKEDG 122
Query: 88 EIVQEIDLRAQGKRGTHEARCVSRTXXXXXXXXXXPRGTIRYSSKIVSIEEDGNAK-ILH 146
++ + + + E R V R P TIR+SSK+ SI+ + N +L
Sbjct: 123 RELRSFKFKDDDQ--SQEVRAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQ 180
Query: 147 LSDGSTLRAKVLIGCDGINSVVARWLGLAKPSDSGHTATRGRAKYPDGHGFEPRFLQLVG 206
L DG+ L A+++IGCDGI S VA W+G ++P GH A RG YP+G F+ + + G
Sbjct: 181 LGDGTRLLAQIVIGCDGIRSKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYG 240
Query: 207 QGFRAGMVPCNDTDVYWFFTWXXXXXXXXXXXXXAATKQFVLTKLRSTNVPPQVLEAVER 266
+G RAG VP + T VYWF + KQ K + P + ++
Sbjct: 241 KGIRAGYVPVSTTKVYWFICFNSPSLGPKITDPAILKKQ---AKELVSTWPEDLQNLIDL 297
Query: 267 SEMNDVLAAPL--RFRSPLSLPFASISKGNVCVAGDALHPTTPDLAQGACTALEDAVVLA 324
+ + PL R+ P P A SKG V + GDA HP TP+L QGAC ALED+VVLA
Sbjct: 298 TPDETISRTPLVDRWLWPGIAPPA--SKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLA 355
Query: 325 RCLGEALLLRTGDCAAEESHRVVEAALRRYADARRWRSAQLTGASYAVGFVQQSDHPAVG 384
L A+ ES +E A+ Y R R+ LT + VG + Q ++P V
Sbjct: 356 NKLANAI------NGGTES---IEVAMESYGSERWSRAFPLTVRANLVGALLQWENPLVC 406
Query: 385 FLRDKLLSGVLAKTLLMMP-----DYDCGTLSSS 413
+R+ + V+ K L + P +++C L S
Sbjct: 407 SIRNNI---VIPKLLRLGPMLEHTNFECEPLFVS 437
>AT2G29720.1 | chr2:12700592-12702289 REVERSE LENGTH=428
Length = 427
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/370 (34%), Positives = 189/370 (51%), Gaps = 20/370 (5%)
Query: 28 HRKGLRSVVLESSPTLRTSGLAFITWTNAFRALDALGVGDKMRSQHQQIQRLNVMSSATG 87
HR G+RSVVLE + +LRT G + N +R LDA+ +G ++R Q ++Q + V+ G
Sbjct: 62 HRLGIRSVVLEQAESLRTGGASLTLSKNGWRVLDAISIGPQLRKQFLEMQGV-VLKKEDG 120
Query: 88 EIVQEIDLRAQGKRGTHEARCVSRTXXXXXXXXXXPRGTIRYSSKIVSIEEDGNAK-ILH 146
++ + + + E R V R P TIR+SSK+ SI+ + N +L
Sbjct: 121 RELRSFKFKDNDQ--SQEVRGVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQ 178
Query: 147 LSDGSTLRAKVLIGCDGINSVVARWLGLAKPSDSGHTATRGRAKYPDGHGFEPRFLQLVG 206
L DG+ A ++IGCDGI S VA W+G ++P G+ A RG +P+G F+ + + G
Sbjct: 179 LKDGTRFLANIVIGCDGIRSKVATWMGFSEPKYVGYCAFRGLGFFPNGQPFQQKVNYIFG 238
Query: 207 QGFRAGMVPCNDTDVYWFFTWXXXXXXXXXXXXXAATKQFVLTKLRSTNVPPQVLEAVER 266
+G RAG VP + T VYWF T+ K+ K + P + ++
Sbjct: 239 RGLRAGYVPVSATKVYWFITFNSPSLGPQMMDPAILRKE---AKELVSTWPEDLQNLIDL 295
Query: 267 SEMNDVLAAPL--RFRSPLSLPFASISKGNVCVAGDALHPTTPDLAQGACTALEDAVVLA 324
+ + PL R+ P P S SKG V + GDA HP TP+L QGAC ALED+V+LA
Sbjct: 296 TPDEAISRTPLADRWLWPGIAP--SASKGRVVLVGDAWHPMTPNLGQGACCALEDSVLLA 353
Query: 325 RCLGEALLLRTGDCAAEESHRVVEAALRRYADARRWRSAQLTGASYAVGFVQQSDHPAVG 384
L A+ ES VE A+ Y R + +LT + VG + QSD+P V
Sbjct: 354 NKLASAI------NGGTES---VEGAMESYRSERWSQVFRLTVLANLVGKLLQSDNPLVC 404
Query: 385 FLRDKLLSGV 394
+RD ++S +
Sbjct: 405 SVRDNIVSAM 414
>AT4G15765.1 | chr4:8975783-8977211 REVERSE LENGTH=272
Length = 271
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 115/284 (40%), Gaps = 45/284 (15%)
Query: 28 HRKGLRSVVLESSPTLRTSGLAFITWTNAFRALDALGVGDKMRSQHQQIQRLNVMSSATG 87
HRKG++SVVLE S ++R+ G AF W D L + I+R + A+
Sbjct: 23 HRKGIKSVVLERSESVRSEGAAF--WIR-----DVL--------IEKGIKRRESVGPAS- 66
Query: 88 EIVQEIDLRAQGKRGTHEARCVSRTXXXXXXXXXXPRGTIRYSSKIVSI--EEDGNAKIL 145
E R V R P GT+R I+S+ +E + I+
Sbjct: 67 ---------------YGEVRGVLRNDLVRALAHALPLGTLRLGCHILSVKLDETKSFPIV 111
Query: 146 HLSDGSTLRAKVLIGCDGINSVVARWLGLAKPSDSGHTATRGRAKYPDGHGFEPRFLQLV 205
H VLIGCDG NSVV+R+LGL D G A RG YPD HGF F+++
Sbjct: 112 H----------VLIGCDGSNSVVSRFLGLNPTKDLGSRAIRGFTNYPDDHGFRQEFIRIK 161
Query: 206 GQGFRAGMVPCNDTDVYWFFTWXXXXXXXXXXXXXAATKQFVLTKLRSTNVPPQVLEAVE 265
+G +P V+WF + L +R + + E V+
Sbjct: 162 MDNVVSGRLPITHKLVFWFVVLRNCPQDSNFLKNQEDIARLALASVREFS--EEWKEMVK 219
Query: 266 RSEMNDVLAAPLRFRSPLSLPFASISKGNVCVAGDALHPTTPDL 309
+M+ + LR+R+P + +G V V P P L
Sbjct: 220 NCDMDSLYINRLRYRAPWDVLSGKFRRGTVTVGRRQYAPNGPIL 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,670,924
Number of extensions: 278791
Number of successful extensions: 589
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 6
Length of query: 416
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,337,553
Effective search space: 2626329195
Effective search space used: 2626329195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)