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Os03g0146100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tonoplast intrinsic protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0389) R2 : 0.873
β1 : -1.53 (0.143) R2dD : 0.0356 R2D : 0.0286
β2 : 2.47 (0.108) R2dC : 0.183 R2C : 0.42
β3 : -2.83 (0.0865) R2dE : 0.389 R2E : 0.622
β4 : 5.04 (0.388) R2dD*C : 0.036 R2D*C : 0.0164
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.192 (0.0828) R2dN8 : 0.00152 R2N8 : 0.00333
σ : 0.725
deviance : 242.58
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C
peak time of C : 9.18
E
wheather : radiation
threshold : 5.24
memory length : 209
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238.87 0.726 13.5 -1.6 2.51 -2.78 5.14 1.08 0.155 9.39 5.033 218 -- --
242.58 0.725 13.5 -1.53 2.47 -2.83 5.04 -- 0.192 9.18 5.24 209 -- --
268.45 0.763 13.5 -1.33 2.82 -1.86 -- -2.49 0.176 11.2 6.669 97 -- --
300.94 0.808 13.5 -1.32 2.8 -1.91 -- -- 0.175 11.1 6.172 116 -- --
392.1 0.922 13.6 -1.27 -- -3.81 -- -2.14 0.0401 -- 6.028 85 -- --
308.7 0.824 13.5 -1.39 4.88 -- 3.01 -- 0.263 11.8 -- -- -- --
347.36 0.873 13.4 -1.27 4.87 -- -- -- 0.278 11.9 -- -- -- --
419.51 0.954 13.6 -1.33 -- -3.83 -- -- 0.0383 -- 5.607 95 -- --
345.99 0.866 13.5 -- 2.91 -1.82 -- -- 0.329 11.2 6.957 119 -- --
1840.36 2 13.6 -1.42 -- -- -- -- 0.215 -- -- -- -- --
389.87 0.924 13.4 -- 4.89 -- -- -- 0.42 11.9 -- -- -- --
465.5 1 13.6 -- -- -3.83 -- -- 0.177 -- 6.207 89 -- --
1893.21 2.03 13.5 -- -- -- -- -- 0.372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.82 precipitation 0.1 270 < th dose independent sin 4 NA
2 231.82 precipitation 0.1 270 < th dose dependent sin 4 NA
5 233.11 precipitation 0.1 720 < th dose independent rect. 3 15
6 233.11 precipitation 0.1 720 < th dose dependent rect. 3 15
7 235.66 temperature 30.0 720 < th dose independent rect. 18 10
9 238.02 temperature 30.0 720 < th dose independent rect. 16 13
12 238.64 humidity 70.0 720 > th dose independent rect. 18 10
13 239.64 precipitation 0.1 270 < th dose independent sin 1 NA
14 239.64 precipitation 0.1 270 < th dose dependent sin 1 NA
15 239.92 radiation 1.0 720 < th dose independent rect. 17 11
16 240.48 radiation 10.0 720 < th dose dependent rect. 16 14
17 240.59 temperature 30.0 720 < th dose independent rect. 17 4
20 240.83 radiation 1.0 720 < th dose dependent rect. 17 11
21 241.01 radiation 1.0 270 > th dose independent rect. 17 23
28 242.18 humidity 50.0 720 > th dose dependent rect. 18 3
29 242.27 radiation 30.0 720 < th dose dependent rect. 16 14
30 242.73 temperature 30.0 720 < th dose independent rect. 16 6
32 242.81 radiation 1.0 720 < th dose dependent rect. 17 18
33 242.83 radiation 1.0 720 < th dose independent rect. 17 13
44 243.98 humidity 90.0 30 < th dose independent rect. 6 13
49 244.26 radiation 1.0 720 < th dose independent rect. 17 18
71 245.43 radiation 1.0 720 < th dose independent sin 12 NA
75 245.62 radiation 1.0 720 < th dose dependent sin 12 NA
80 245.86 humidity 50.0 720 > th dose dependent rect. 18 10
86 246.09 radiation 10.0 90 < th dose dependent sin 21 NA
97 246.42 precipitation 0.1 720 < th dose independent rect. 6 17
98 246.42 precipitation 0.1 720 < th dose dependent rect. 6 17
106 246.77 humidity 90.0 30 < th dose independent sin 22 NA
121 247.28 precipitation 0.1 270 > th dose independent rect. 1 18
164 248.70 radiation 1.0 270 < th dose independent rect. 22 23
181 249.04 precipitation 0.1 720 < th dose independent rect. 13 19
182 249.04 precipitation 0.1 720 < th dose dependent rect. 13 19
189 249.18 radiation 1.0 720 < th dose independent rect. 17 4
193 249.24 radiation 10.0 720 < th dose dependent rect. 16 5
206 249.53 radiation 1.0 270 < th dose dependent rect. 22 23
207 249.57 radiation 10.0 90 < th dose dependent rect. 7 16
209 249.59 radiation 1.0 270 > th dose independent rect. 5 12
234 249.81 humidity 50.0 720 > th dose independent rect. 16 14
241 249.95 precipitation 0.1 270 < th dose independent sin 15 NA
243 249.95 precipitation 0.1 270 < th dose dependent sin 15 NA
249 250.03 radiation 10.0 90 < th dose dependent rect. 5 18
291 250.73 precipitation 0.1 270 > th dose independent sin 2 NA
296 250.81 radiation 20.0 270 < th dose independent rect. 11 10
309 251.02 precipitation 0.1 720 < th dose independent rect. 11 7
311 251.02 precipitation 0.1 720 < th dose dependent rect. 11 7
317 251.11 radiation 1.0 270 < th dose independent rect. 7 23
333 251.26 radiation 1.0 270 < th dose independent no NA NA
337 251.30 radiation 1.0 270 > th dose independent no NA NA
338 251.30 humidity 70.0 720 > th dose independent rect. 18 3
389 251.44 radiation 20.0 720 < th dose independent rect. 16 14
408 251.87 precipitation 0.1 720 < th dose independent rect. 21 21
409 251.87 precipitation 0.1 720 < th dose dependent rect. 21 21
426 252.19 humidity 50.0 90 > th dose dependent rect. 13 10
428 252.25 radiation 30.0 270 < th dose dependent rect. 12 9
450 252.56 radiation 10.0 90 < th dose dependent rect. 11 12
467 252.82 atmosphere 1015.0 720 < th dose independent rect. 3 15
489 253.22 precipitation 0.1 720 < th dose independent rect. 6 9
491 253.22 precipitation 0.1 720 < th dose dependent rect. 6 9
493 253.24 precipitation 0.1 270 > th dose independent rect. 16 22
502 253.35 temperature 30.0 720 < th dose independent sin 14 NA
507 253.38 precipitation 0.1 270 > th dose independent rect. 16 19
515 253.46 atmosphere 995.0 720 > th dose independent rect. 18 9
533 253.63 precipitation 0.1 270 > th dose independent rect. 6 23
535 253.67 radiation 40.0 90 < th dose dependent sin 12 NA
550 253.79 radiation 10.0 90 < th dose independent sin 19 NA
554 253.83 radiation 1.0 270 < th dose dependent no NA NA
589 254.10 radiation 1.0 270 < th dose dependent rect. 7 23
605 254.33 radiation 1.0 720 < th dose independent rect. 24 23
610 254.39 radiation 1.0 720 < th dose independent rect. 5 23
622 254.49 precipitation 0.1 270 > th dose independent no NA NA
623 254.49 precipitation 0.1 270 < th dose independent no NA NA
624 254.49 precipitation 0.1 270 > th dose independent rect. 13 22
627 254.49 precipitation 0.1 270 < th dose dependent no NA NA
630 254.51 precipitation 0.1 270 > th dose independent rect. 9 23
632 254.53 radiation 1.0 720 > th dose independent rect. 12 23
635 254.55 precipitation 0.1 270 > th dose independent rect. 24 23
677 254.91 atmosphere 995.0 720 > th dose independent rect. 16 14
709 255.21 radiation 1.0 720 < th dose dependent rect. 5 23
731 255.41 temperature 30.0 720 < th dose independent rect. 17 18
734 255.42 humidity 50.0 90 > th dose dependent rect. 15 8
745 255.46 radiation 10.0 90 < th dose independent rect. 7 16
748 255.49 radiation 10.0 90 < th dose dependent rect. 5 22
768 255.75 precipitation 0.1 270 > th dose dependent sin 2 NA
813 256.14 radiation 10.0 720 < th dose dependent rect. 11 19
846 256.40 precipitation 0.1 720 < th dose independent rect. 19 23
847 256.40 precipitation 0.1 720 < th dose dependent rect. 19 23
856 256.50 humidity 50.0 720 > th dose independent rect. 16 6
858 256.50 atmosphere 1015.0 720 < th dose independent rect. 22 10
867 256.55 humidity 70.0 720 > th dose independent sin 12 NA
870 256.58 atmosphere 1010.0 270 < th dose dependent rect. 21 9
871 256.60 precipitation 0.1 720 < th dose independent rect. 23 9
873 256.60 precipitation 0.1 720 < th dose dependent rect. 23 9
878 256.65 humidity 60.0 10 > th dose dependent rect. 12 10
956 256.89 humidity 60.0 90 > th dose dependent rect. 13 8
960 256.90 precipitation 0.1 720 < th dose independent rect. 19 15
969 256.90 precipitation 0.1 720 < th dose dependent rect. 19 15