Os03g0144000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0144000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.77 | 0.335 | 8.65 | 0.00161 | 0.301 | 0.988 | -0.645 | 0.999 | 0.0665 | 21.5 | 20.73 | 1295 | -- | -- |
| 53.06 | 0.339 | 8.68 | -0.174 | 0.27 | 0.927 | -0.788 | -- | 0.0322 | 21.2 | 20.8 | 1239 | -- | -- |
| 51.89 | 0.336 | 8.66 | 0.0181 | 0.315 | 0.97 | -- | 0.915 | 0.0652 | 20.6 | 20.9 | 1279 | -- | -- |
| 53.43 | 0.34 | 8.69 | -0.188 | 0.287 | 0.886 | -- | -- | 0.0215 | 20.4 | 20.7 | 1173 | -- | -- |
| 56.85 | 0.351 | 8.66 | -0.0366 | -- | 0.935 | -- | 0.616 | 0.0472 | -- | 20.9 | 1084 | -- | -- |
| 71.37 | 0.396 | 8.64 | 0.165 | 0.329 | -- | -0.598 | -- | 0.234 | 21.9 | -- | -- | -- | -- |
| 72.56 | 0.399 | 8.64 | 0.191 | 0.341 | -- | -- | -- | 0.237 | 21.2 | -- | -- | -- | -- |
| 57.75 | 0.354 | 8.68 | -0.163 | -- | 0.867 | -- | -- | 0.0236 | -- | 20.7 | 1035 | -- | -- |
| 53.96 | 0.342 | 8.67 | -- | 0.303 | 0.783 | -- | -- | 0.0536 | 20.4 | 20.91 | 1181 | -- | -- |
| 79.33 | 0.416 | 8.63 | 0.192 | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
| 73.52 | 0.401 | 8.64 | -- | 0.341 | -- | -- | -- | 0.215 | 21.3 | -- | -- | -- | -- |
| 58.16 | 0.355 | 8.68 | -- | -- | 0.772 | -- | -- | 0.031 | -- | 21.2 | 953 | -- | -- |
| 80.3 | 0.418 | 8.63 | -- | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 2 | 51.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 3 | 51.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 5 | 51.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 7 | 51.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 8 | 51.58 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 13 | 51.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 27 | 51.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 29 | 51.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 39 | 51.76 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 47 | 51.80 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 51 | 51.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 55 | 51.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 124 | 51.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 164 | 52.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 275 | 52.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 277 | 52.27 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 302 | 52.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 313 | 52.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 19 |
| 346 | 52.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 371 | 52.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 386 | 52.45 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 404 | 52.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 414 | 52.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 419 | 52.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 440 | 52.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 484 | 52.66 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 486 | 52.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 494 | 52.68 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 603 | 53.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 623 | 53.19 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 638 | 53.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 654 | 53.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 672 | 53.31 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 695 | 53.35 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 741 | 53.43 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 753 | 53.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 760 | 53.46 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 916 | 53.68 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 917 | 53.68 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |