Os03g0143000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os03g0143000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.68 | 0.247 | 10.2 | -0.921 | 0.107 | -0.751 | -0.404 | 0.676 | -0.109 | 10.7 | 29.82 | 91 | -- | -- |
| 28.07 | 0.249 | 10.2 | -0.793 | 0.0534 | -0.753 | -0.566 | -- | -0.076 | 12.3 | 29.82 | 91 | -- | -- |
| 28.28 | 0.248 | 10.2 | -0.966 | 0.113 | -0.74 | -- | 0.907 | -0.103 | 10.4 | 30.1 | 95 | -- | -- |
| 29.38 | 0.252 | 10.2 | -0.828 | 0.107 | -0.766 | -- | -- | -0.0857 | 9.93 | 29.51 | 92 | -- | -- |
| 28.59 | 0.25 | 10.2 | -0.967 | -- | -0.801 | -- | 0.851 | -0.124 | -- | 30.1 | 95 | -- | -- |
| 36.2 | 0.282 | 10.2 | -0.621 | 0.295 | -- | -0.498 | -- | 0.0707 | 13.4 | -- | -- | -- | -- |
| 37.2 | 0.286 | 10.2 | -0.638 | 0.296 | -- | -- | -- | 0.0682 | 13.5 | -- | -- | -- | -- |
| 29.59 | 0.254 | 10.2 | -0.826 | -- | -0.798 | -- | -- | -0.085 | -- | 30.1 | 95 | -- | -- |
| 45.32 | 0.315 | 10.2 | -- | 0.173 | -0.411 | -- | -- | 0.0683 | 13.2 | 29.51 | 92 | -- | -- |
| 42.57 | 0.305 | 10.2 | -0.65 | -- | -- | -- | -- | 0.0618 | -- | -- | -- | -- | -- |
| 47.92 | 0.324 | 10.2 | -- | 0.308 | -- | -- | -- | 0.139 | 13.6 | -- | -- | -- | -- |
| 46.5 | 0.319 | 10.2 | -- | -- | -0.577 | -- | -- | 0.0419 | -- | 30.1 | 95 | -- | -- |
| 53.71 | 0.342 | 10.2 | -- | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 26.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 3 | 26.26 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 23 | 26.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 42 | 26.99 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 57 | 27.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 75 | 27.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 76 | 27.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 90 | 27.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 18 |
| 92 | 27.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 102 | 27.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 113 | 27.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 119 | 27.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 126 | 27.69 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 146 | 27.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 151 | 27.82 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 159 | 27.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 165 | 27.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 166 | 27.90 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 167 | 27.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 172 | 27.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 194 | 27.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 216 | 28.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 221 | 28.05 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 262 | 28.13 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 347 | 28.31 | temperature | 30 | 720 | < th | dose dependent | sin | 23 | NA |
| 358 | 28.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 367 | 28.34 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 379 | 28.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 392 | 28.37 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 393 | 28.37 | temperature | 10 | 720 | > th | dose dependent | sin | 23 | NA |
| 420 | 28.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 472 | 28.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 480 | 28.47 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 514 | 28.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 560 | 28.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 668 | 28.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 771 | 28.65 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 780 | 28.66 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 808 | 28.67 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 933 | 28.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 19 |
| 941 | 28.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |