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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0137700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mg2+ transporter protein, CorA-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.87 (0.048) R2 : 0.508
β1 : 2.02 (0.198) R2dD : 0.216 R2D : -0.131
β2 : 1.06 (0.0962) R2dC : 0.13 R2C : 0.104
β3 : -1.9 (0.262) R2dE : 0.101 R2E : -0.0727
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.35 (0.703) R2dD*E : 0.293 R2D*E : 0.258
γ1 : 0.299 (0.0886) R2dN8 : 0.0171 R2N8 : -0.0459
σ : 0.754
deviance : 261.83
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_____
C
peak time of C : 0.912
E
wheather : radiation
threshold : 98.48
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.8
open length of G : 13.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
259.63 0.757 4.87 2.07 1.13 -1.92 0.806 -9.64 0.307 0.72 99.98 4321 16.8 13.1
404.09 0.936 4.87 1.86 1.45 -2.37 0.827 -- 0.208 0.397 112.6 4323 16.5 13.2
261.83 0.754 4.87 2.02 1.06 -1.9 -- -9.35 0.299 0.912 98.48 4320 16.8 13.2
370.01 0.896 4.7 2.06 1.05 -1.94 -- -- 0.188 0.788 98.72 11520 16.9 13.5
330.52 0.847 4.87 2.02 -- -1.79 -- -9.35 0.299 -- 98.48 4320 16.8 13.2
414.6 0.955 4.5 0.79 1.11 -- 0.392 -- 0.603 1.22 -- -- -- --
415.23 0.954 4.5 0.776 1.11 -- -- -- 0.601 1.21 -- -- -- --
400.04 0.932 4.6 1.62 -- -2 -- -- 0.219 -- 104.5 11493 17.2 13.7
379.73 0.908 4.68 -- 1.07 -1.32 -- -- 0.172 1.87 146.4 11511 13 17
491.48 1.04 4.49 0.819 -- -- -- -- 0.624 -- -- -- -- --
431.12 0.971 4.52 -- 1.12 -- -- -- 0.515 1.23 -- -- -- --
431.89 0.968 4.65 -- -- -1.38 -- -- 0.194 -- 178.6 11441 13.4 17.4
509.18 1.05 4.51 -- -- -- -- -- 0.533 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 264.04 radiation 40 4320 < th dose dependent rect. 17 13
2 264.14 radiation 40 4320 < th dose dependent rect. 17 3
17 265.10 radiation 1 4320 > th dose dependent rect. 17 1
26 265.50 radiation 1 4320 > th dose dependent rect. 17 13
28 265.60 radiation 40 4320 < th dose dependent rect. 17 11
70 268.59 radiation 10 4320 > th dose dependent rect. 16 15
76 270.99 radiation 10 4320 < th dose independent rect. 15 16
144 274.90 temperature 30 43200 < th dose dependent rect. 18 1
145 274.91 temperature 10 43200 > th dose dependent rect. 18 1
153 275.46 radiation 40 4320 < th dose dependent rect. 2 4
162 275.66 radiation 40 4320 < th dose independent rect. 14 19
188 276.29 radiation 40 4320 < th dose dependent rect. 5 1
195 276.37 radiation 10 4320 < th dose independent rect. 16 2
217 276.71 radiation 10 4320 < th dose independent sin 13 NA
230 276.78 radiation 10 4320 < th dose independent rect. 16 12
268 277.21 radiation 1 43200 > th dose independent rect. 18 12
296 277.41 radiation 10 4320 < th dose dependent sin 14 NA
325 277.68 radiation 10 4320 > th dose independent rect. 16 15
377 278.00 temperature 10 4320 > th dose dependent rect. 6 1
388 278.09 temperature 30 43200 < th dose dependent sin 16 NA
409 278.17 temperature 30 4320 < th dose dependent rect. 6 1
417 278.19 temperature 30 43200 < th dose dependent rect. 15 15
422 278.21 temperature 10 43200 > th dose dependent sin 16 NA
442 278.28 radiation 1 43200 > th dose independent rect. 17 2
576 278.62 temperature 30 43200 < th dose dependent rect. 5 1
595 278.67 radiation 1 43200 < th dose independent rect. 16 13
643 278.79 temperature 30 43200 < th dose dependent rect. 4 19
651 278.81 temperature 10 43200 > th dose dependent rect. 5 2
770 278.94 temperature 10 43200 > th dose dependent rect. 4 19
936 279.11 temperature 30 43200 < th dose dependent no NA NA
950 279.12 radiation 1 43200 < th dose independent rect. 16 3