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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0133100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.64 (0.0483) R2 : 0.274
β1 : -0.365 (0.178) R2dD : 0.00832 R2D : 0.00808
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.66 (0.261) R2dE : 0.167 R2E : 0.193
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.92 (0.825) R2dD*E : 0.0609 R2D*E : 0.0825
γ1 : -0.228 (0.104) R2dN8 : 0.00892 R2N8 : 0.0143
σ : 0.901
deviance : 374.44
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.75
memory length : 241
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.3
open length of G : 4.72

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
370.4 0.904 3.63 -0.375 0.338 2.68 0.0663 -4.67 -0.194 11.2 28.42 247 23 5.03
390.95 0.921 3.62 -0.475 0.428 2.93 1.54 -- -0.167 13.7 28.41 232 22.8 5.58
370.18 0.896 3.62 -0.357 0.347 2.66 -- -4.67 -0.186 10.9 28.09 240 23 5.05
399.78 0.931 3.63 -0.455 0.357 2.88 -- -- -0.196 10.8 27.58 239 22.9 5.13
374.44 0.901 3.64 -0.365 -- 2.66 -- -4.92 -0.228 -- 27.75 241 23.3 4.72
444.66 0.989 3.68 -0.629 0.899 -- -2.09 -- -0.414 4.3 -- -- -- --
455.97 1 3.67 -0.608 0.902 -- -- -- -0.402 4.77 -- -- -- --
404.87 0.937 3.65 -0.492 -- 2.85 -- -- -0.229 -- 27.48 246 23.3 4.7
405.29 0.938 3.61 -- 0.383 2.97 -- -- -0.139 11.4 27.57 242 22.8 5.21
499.04 1.04 3.68 -0.574 -- -- -- -- -0.379 -- -- -- -- --
465.71 1.01 3.65 -- 0.891 -- -- -- -0.335 4.79 -- -- -- --
411.32 0.945 3.61 -- -- 2.94 -- -- -0.12 -- 27.19 261 23.1 4.72
507.73 1.05 3.66 -- -- -- -- -- -0.315 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 373.15 temperature 30.0 270 < th dose dependent rect. 23 5
10 385.44 radiation 1.0 720 < th dose dependent rect. 16 12
20 389.69 temperature 10.0 270 > th dose dependent rect. 19 13
23 390.99 temperature 25.0 10 < th dose dependent rect. 24 5
24 391.07 temperature 30.0 90 < th dose dependent rect. 3 2
25 391.11 radiation 1.0 720 < th dose dependent rect. 16 4
29 391.64 temperature 10.0 30 > th dose dependent rect. 6 21
31 391.78 radiation 1.0 720 < th dose independent rect. 16 12
43 393.41 temperature 25.0 270 < th dose independent rect. 23 5
45 393.52 temperature 10.0 270 > th dose dependent rect. 4 20
55 394.14 wind 1.0 270 > th dose independent rect. 24 4
69 395.61 temperature 30.0 90 < th dose dependent rect. 15 14
71 395.75 temperature 30.0 270 < th dose dependent rect. 11 17
72 395.79 temperature 25.0 90 < th dose independent rect. 1 4
85 396.45 atmosphere 1000.0 270 > th dose independent rect. 9 19
96 397.14 temperature 30.0 10 < th dose dependent rect. 16 14
101 397.37 temperature 30.0 90 < th dose dependent rect. 13 16
103 397.44 radiation 1.0 720 < th dose independent rect. 16 4
104 397.53 temperature 30.0 10 < th dose dependent rect. 14 16
105 397.60 wind 1.0 270 > th dose independent rect. 1 2
107 397.71 temperature 15.0 270 > th dose independent rect. 4 19
109 397.73 temperature 15.0 10 > th dose dependent rect. 21 13
113 397.84 temperature 30.0 10 < th dose dependent rect. 12 18
118 397.99 wind 9.0 90 < th dose independent rect. 4 23
119 398.01 wind 9.0 270 < th dose independent rect. 4 19
134 398.73 temperature 15.0 30 > th dose independent rect. 5 22
135 398.74 temperature 30.0 90 < th dose dependent rect. 17 12
136 398.76 humidity 50.0 270 > th dose dependent rect. 23 5
137 398.79 atmosphere 1000.0 270 > th dose independent rect. 8 21
157 399.29 temperature 10.0 720 > th dose dependent rect. 13 3
159 399.33 wind 9.0 10 < th dose independent rect. 5 22
167 399.68 atmosphere 1000.0 270 > th dose independent rect. 23 5
172 399.78 wind 1.0 270 > th dose independent rect. 9 19
174 399.79 wind 7.0 270 < th dose independent rect. 23 5
183 400.00 temperature 25.0 90 < th dose independent rect. 3 2
184 400.09 wind 5.0 90 < th dose independent rect. 3 1
189 400.25 temperature 30.0 270 < th dose independent rect. 24 13
194 400.29 temperature 10.0 270 > th dose independent rect. 23 5
196 400.29 humidity 50.0 270 > th dose independent rect. 23 5
200 400.29 radiation 1.0 270 < th dose independent rect. 23 5
206 400.29 radiation 1.0 270 < th dose dependent rect. 23 5
212 400.36 precipitation 0.1 270 < th dose independent rect. 4 19
215 400.36 precipitation 0.1 270 < th dose dependent rect. 4 19
236 400.49 atmosphere 1015.0 270 < th dose independent rect. 24 4
237 400.50 precipitation 0.1 270 < th dose independent rect. 23 5
238 400.50 precipitation 0.1 270 < th dose dependent rect. 23 5
265 400.75 precipitation 0.1 90 < th dose independent rect. 3 1
266 400.75 precipitation 0.1 90 < th dose dependent rect. 3 1
269 400.76 temperature 10.0 90 > th dose independent rect. 3 1
272 400.76 humidity 50.0 90 > th dose independent rect. 3 1
275 400.76 atmosphere 995.0 90 > th dose independent rect. 3 1
276 400.76 atmosphere 1010.0 90 < th dose independent rect. 3 1
278 400.76 radiation 1.0 90 < th dose independent rect. 3 1
284 400.76 radiation 1.0 90 < th dose dependent rect. 3 1
290 400.82 precipitation 0.1 90 < th dose independent rect. 4 23
291 400.82 precipitation 0.1 90 < th dose dependent rect. 4 23
292 400.83 humidity 50.0 90 > th dose dependent rect. 3 1
296 400.93 humidity 60.0 270 > th dose independent rect. 4 5
299 400.96 radiation 1.0 10 < th dose dependent rect. 3 11
301 400.97 wind 1.0 90 > th dose independent rect. 3 1
303 400.97 precipitation 0.1 10 < th dose independent rect. 5 22
304 400.97 precipitation 0.1 10 < th dose dependent rect. 5 22
307 401.03 wind 9.0 270 < th dose independent rect. 4 5
308 401.03 temperature 10.0 270 > th dose independent rect. 4 5
311 401.03 atmosphere 995.0 270 > th dose independent rect. 4 5
312 401.03 atmosphere 1015.0 270 < th dose independent rect. 4 5
313 401.03 temperature 10.0 270 > th dose independent rect. 9 19
317 401.16 precipitation 0.1 270 < th dose independent rect. 4 5
318 401.16 precipitation 0.1 270 < th dose dependent rect. 4 5
324 401.25 radiation 1.0 30 < th dose dependent rect. 3 3
325 401.30 precipitation 0.1 270 < th dose independent rect. 9 19
327 401.30 precipitation 0.1 270 < th dose dependent rect. 9 19
328 401.32 atmosphere 1015.0 30 < th dose dependent rect. 3 2
335 401.45 temperature 30.0 270 < th dose independent rect. 9 19
344 401.62 temperature 30.0 270 < th dose independent rect. 4 5
350 401.70 radiation 40.0 270 < th dose independent rect. 4 5
354 401.82 radiation 1.0 10 < th dose dependent rect. 3 9
362 401.97 radiation 1.0 10 < th dose dependent sin 4 NA
364 401.98 radiation 1.0 10 < th dose independent rect. 3 11
371 402.02 humidity 50.0 270 > th dose dependent rect. 4 5
405 402.14 atmosphere 995.0 270 > th dose independent rect. 4 19
413 402.21 temperature 25.0 720 < th dose independent rect. 16 3
432 402.55 wind 9.0 1440 < th dose independent rect. 4 2
433 402.55 temperature 10.0 1440 > th dose independent rect. 4 2
436 402.55 temperature 30.0 1440 < th dose independent rect. 4 2
440 402.55 humidity 50.0 1440 > th dose independent rect. 4 2
449 402.55 atmosphere 995.0 1440 > th dose independent rect. 4 2
450 402.55 atmosphere 1015.0 1440 < th dose independent rect. 4 2
451 402.55 radiation 20.0 1440 < th dose independent rect. 4 2
460 402.55 temperature 10.0 1440 > th dose independent rect. 6 22
467 402.63 humidity 50.0 270 > th dose dependent rect. 5 3
470 402.71 wind 9.0 90 < th dose dependent rect. 3 1
472 402.74 temperature 30.0 90 < th dose independent rect. 11 18
477 402.77 radiation 40.0 270 < th dose independent rect. 5 3
485 402.86 radiation 1.0 10 < th dose independent rect. 3 9
512 402.92 atmosphere 995.0 90 > th dose dependent rect. 3 1
519 403.01 humidity 50.0 270 > th dose independent rect. 9 19
526 403.05 humidity 70.0 270 > th dose independent rect. 5 3
528 403.06 wind 9.0 270 < th dose independent rect. 5 3
529 403.06 temperature 10.0 270 > th dose independent rect. 5 3
531 403.06 temperature 30.0 270 < th dose independent rect. 5 3
532 403.06 humidity 50.0 270 > th dose independent rect. 5 3
534 403.06 atmosphere 995.0 270 > th dose independent rect. 5 3
535 403.06 atmosphere 1015.0 270 < th dose independent rect. 5 3
536 403.06 temperature 10.0 270 > th dose independent rect. 8 21
538 403.14 precipitation 0.1 270 < th dose independent rect. 5 3
539 403.14 precipitation 0.1 270 < th dose dependent rect. 5 3
555 403.27 temperature 20.0 10 > th dose independent rect. 20 14
558 403.29 atmosphere 1000.0 270 > th dose independent rect. 24 13
561 403.31 atmosphere 995.0 90 > th dose independent rect. 4 23
570 403.44 precipitation 0.1 270 < th dose independent rect. 8 21
571 403.44 precipitation 0.1 270 < th dose dependent rect. 8 21
579 403.67 radiation 10.0 90 < th dose dependent sin 9 NA
623 403.92 radiation 1.0 10 < th dose independent sin 4 NA
625 403.93 atmosphere 1015.0 30 < th dose dependent rect. 6 21
631 404.01 wind 9.0 270 < th dose dependent rect. 23 5
633 404.02 wind 9.0 270 < th dose independent rect. 13 11
643 404.15 radiation 1.0 10 > th dose independent sin 4 NA
646 404.17 radiation 40.0 270 < th dose dependent rect. 5 3
650 404.18 temperature 30.0 720 < th dose dependent rect. 16 3
651 404.18 atmosphere 1015.0 90 < th dose dependent rect. 6 19
653 404.21 atmosphere 1000.0 270 > th dose independent rect. 8 10
658 404.25 temperature 15.0 10 > th dose independent rect. 6 19
675 404.43 atmosphere 1010.0 10 < th dose independent rect. 3 4
722 404.83 radiation 40.0 270 < th dose dependent rect. 15 13
777 405.03 temperature 30.0 90 < th dose dependent rect. 19 11
779 405.04 humidity 50.0 270 > th dose dependent rect. 16 12
786 405.06 temperature 10.0 270 > th dose dependent rect. 5 3
815 405.14 temperature 25.0 720 > th dose independent rect. 15 1
841 405.22 atmosphere 1015.0 270 < th dose independent rect. 4 19
843 405.23 temperature 10.0 270 > th dose independent rect. 13 11
844 405.23 temperature 10.0 270 > th dose independent rect. 24 13
852 405.24 humidity 50.0 270 > th dose independent rect. 24 13
853 405.24 atmosphere 1015.0 270 < th dose independent rect. 24 13
864 405.28 precipitation 0.1 270 < th dose independent rect. 13 11
866 405.28 precipitation 0.1 270 < th dose dependent rect. 13 11
872 405.33 wind 9.0 270 < th dose independent rect. 9 19
887 405.38 atmosphere 995.0 270 > th dose dependent rect. 9 9
917 405.56 humidity 50.0 270 > th dose independent rect. 4 19
923 405.61 atmosphere 1015.0 270 < th dose dependent rect. 4 20
925 405.64 humidity 50.0 270 > th dose independent rect. 8 21
927 405.65 precipitation 0.1 270 < th dose independent rect. 24 13
929 405.65 precipitation 0.1 270 < th dose dependent rect. 24 13
940 405.70 temperature 15.0 10 > th dose dependent rect. 23 11
967 405.77 atmosphere 995.0 270 > th dose dependent rect. 23 5
993 405.85 wind 9.0 270 < th dose dependent rect. 5 3