BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0133100 Os03g0133100|AK063608
         (115 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42290.1  | chr5:16911700-16912032 FORWARD LENGTH=111           88   7e-19

>AT5G42290.1 | chr5:16911700-16912032 FORWARD LENGTH=111
          Length = 110

 Score = 88.2 bits (217), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 59/92 (64%), Gaps = 17/92 (18%)

Query: 41  REHQPPNISEMKPLTREAYGGGMYANEGRRDPT----------------RPRASATQSAD 84
            +HQPP IS+M+P+T EAYGGG+Y  +  ++ T                RP AS TQSAD
Sbjct: 19  HQHQPPYISQMQPVTHEAYGGGLYGQDDEKETTNLEKEAKNIEKEPQQQRPPASDTQSAD 78

Query: 85  GPEEA-AVRPKHAPPPSTGDRDLDITGQSYIQ 115
           GP+E   + PKH  P S+GDRD+DITGQSYIQ
Sbjct: 79  GPDEVKTLTPKHKQPASSGDRDVDITGQSYIQ 110



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,067,647
Number of extensions: 128694
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 11,106,569
Length adjustment: 84
Effective length of query: 31
Effective length of database: 8,803,625
Effective search space: 272912375
Effective search space used: 272912375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 104 (44.7 bits)