Os03g0132900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chitinase (EC 3.2.1.14) (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0132900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Chitinase (EC 3.2.1.14) (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.26 | 0.662 | 12 | 0.912 | 0.94 | 4.89 | -0.0164 | 4.48 | 0.162 | 5.86 | 1.019 | 10079 | -- | -- |
| 223.23 | 0.696 | 12.1 | -0.00444 | 1.13 | 4.67 | -0.121 | -- | -0.0899 | 4.79 | 1.06 | 10170 | -- | -- |
| 197.36 | 0.654 | 12 | 0.887 | 0.914 | 4.93 | -- | 4.46 | 0.152 | 5.73 | 1.03 | 10098 | -- | -- |
| 182.86 | 0.63 | 12.1 | -0.447 | 1.63 | 4.58 | -- | -- | -0.109 | 4.41 | 1.172 | 14791 | -- | -- |
| 243.29 | 0.726 | 12 | 0.958 | -- | 4.95 | -- | 4.53 | 0.17 | -- | 1.02 | 10094 | -- | -- |
| 564.74 | 1.11 | 11.8 | 1.11 | 1.01 | -- | 0.166 | -- | 1.04 | 5.45 | -- | -- | -- | -- |
| 564.81 | 1.11 | 11.8 | 1.11 | 1.01 | -- | -- | -- | 1.04 | 5.44 | -- | -- | -- | -- |
| 228.15 | 0.703 | 12.1 | -1.03 | -- | 4.56 | -- | -- | -0.571 | -- | 1.126 | 17283 | -- | -- |
| 187.53 | 0.638 | 12.1 | -- | 1.69 | 4.56 | -- | -- | -0.0884 | 4.48 | 1.19 | 14818 | -- | -- |
| 618.22 | 1.16 | 11.8 | 1.14 | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
| 597.35 | 1.14 | 11.9 | -- | 1.03 | -- | -- | -- | 0.913 | 5.4 | -- | -- | -- | -- |
| 236.23 | 0.716 | 12.1 | -- | -- | 3.77 | -- | -- | -0.227 | -- | 1.199 | 17277 | -- | -- |
| 652.79 | 1.19 | 11.9 | -- | -- | -- | -- | -- | 0.935 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.59 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 2 | 165.44 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 3 | 167.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 6 | 169.18 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 9 | 169.64 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 10 | 170.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 12 | 170.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 13 | 170.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 15 | 170.59 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 21 | 171.12 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 22 | 171.14 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 23 | 171.26 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 36 | 171.47 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 1 | 15 |
| 39 | 171.50 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 44 | 171.57 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 47 | 172.43 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 75 | 172.88 | radiation | 1.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 76 | 172.89 | radiation | 1.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 95 | 173.19 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 107 | 173.24 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 123 | 173.58 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 130 | 173.64 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 141 | 173.99 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 167 | 174.36 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 197 | 174.66 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 200 | 174.84 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 202 | 174.86 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 221 | 175.40 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 223 | 175.46 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 286 | 176.60 | radiation | 1.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 301 | 176.79 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 3 | 14 |
| 332 | 177.04 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 7 | 13 |
| 383 | 177.23 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 419 | 177.33 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 431 | 177.38 | radiation | 1.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 464 | 177.54 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 519 | 177.76 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 526 | 177.78 | temperature | 25.0 | 43200 | < th | dose dependent | no | NA | NA |
| 655 | 178.22 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 674 | 178.28 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 13 | 10 |
| 703 | 178.36 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 16 | 17 |
| 712 | 178.39 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 736 | 178.44 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 765 | 178.49 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 17 | NA |
| 940 | 178.73 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 16 | 7 |