Os03g0131400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Poly-A polymerase/tRNA nucleotidyltransferase family protein.
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Os03g0131400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Poly-A polymerase/tRNA nucleotidyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.55 | 0.353 | 8.73 | -0.385 | 0.969 | 0.663 | 0.38 | 2.64 | -0.15 | 20.3 | 31.4 | 104 | -- | -- |
| 62.79 | 0.372 | 8.71 | -0.383 | 0.957 | 0.328 | 0.00574 | -- | -0.116 | 20 | 31.4 | 104 | -- | -- |
| 56.95 | 0.351 | 8.73 | -0.394 | 0.967 | 0.653 | -- | 2.48 | -0.149 | 20.2 | 31.99 | 105 | -- | -- |
| 62.55 | 0.368 | 8.72 | -0.376 | 0.966 | 0.321 | -- | -- | -0.145 | 20.2 | 17.25 | 122 | -- | -- |
| 85.17 | 0.43 | 8.76 | -0.332 | -- | 0.663 | -- | 0.973 | -0.299 | -- | 0.1368 | 880 | -- | -- |
| 64.39 | 0.376 | 8.71 | -0.387 | 0.931 | -- | 0.0561 | -- | -0.121 | 19.7 | -- | -- | -- | -- |
| 64.4 | 0.376 | 8.71 | -0.388 | 0.931 | -- | -- | -- | -0.121 | 19.7 | -- | -- | -- | -- |
| 82.55 | 0.423 | 8.71 | -0.456 | -- | 0.884 | -- | -- | -0.229 | -- | -43.19 | 826 | -- | -- |
| 66.42 | 0.38 | 8.71 | -- | 0.959 | 0.371 | -- | -- | -0.0994 | 20.2 | 18.16 | 122 | -- | -- |
| 111.12 | 0.493 | 8.69 | -0.4 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 68.37 | 0.387 | 8.7 | -- | 0.934 | -- | -- | -- | -0.0773 | 19.7 | -- | -- | -- | -- |
| 88 | 0.437 | 8.7 | -- | -- | 0.864 | -- | -- | -0.176 | -- | -10.35 | 820 | -- | -- |
| 115.35 | 0.501 | 8.68 | -- | -- | -- | -- | -- | -0.0896 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 3 | 54.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 5 | 54.61 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 6 | 54.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 7 | 54.63 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 34 | 55.01 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 11 |
| 42 | 55.05 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 101 | 55.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 114 | 55.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 115 | 55.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 205 | 56.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 206 | 56.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 249 | 56.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 251 | 56.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 277 | 56.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 318 | 56.55 | radiation | 30 | 90 | > th | dose dependent | sin | 4 | NA |
| 323 | 56.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 324 | 56.58 | radiation | 40 | 10 | < th | dose independent | rect. | 13 | 23 |
| 342 | 56.63 | radiation | 40 | 10 | < th | dose independent | rect. | 11 | 23 |
| 365 | 56.69 | radiation | 40 | 10 | < th | dose independent | rect. | 21 | 23 |
| 383 | 56.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 385 | 56.73 | radiation | 30 | 90 | > th | dose dependent | no | NA | NA |
| 388 | 56.73 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 500 | 56.73 | radiation | 30 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 517 | 56.76 | radiation | 40 | 90 | < th | dose independent | rect. | 11 | 23 |
| 520 | 56.77 | radiation | 40 | 10 | < th | dose independent | rect. | 23 | 23 |
| 594 | 56.85 | radiation | 30 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 609 | 56.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 620 | 56.92 | radiation | 40 | 10 | < th | dose independent | no | NA | NA |
| 631 | 56.96 | radiation | 40 | 10 | < th | dose independent | rect. | 15 | 23 |
| 653 | 56.99 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 14 |
| 663 | 57.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 674 | 57.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 675 | 57.03 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 23 |
| 680 | 57.05 | radiation | 40 | 90 | > th | dose independent | sin | 4 | NA |
| 913 | 57.21 | radiation | 40 | 90 | > th | dose independent | rect. | 13 | 23 |
| 948 | 57.25 | radiation | 40 | 90 | > th | dose independent | rect. | 9 | 5 |
| 949 | 57.25 | radiation | 40 | 10 | < th | dose independent | rect. | 1 | 23 |
| 960 | 57.27 | radiation | 40 | 10 | < th | dose independent | rect. | 7 | 23 |
| 970 | 57.30 | radiation | 40 | 90 | < th | dose independent | sin | 5 | NA |
| 971 | 57.30 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 976 | 57.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 977 | 57.32 | radiation | 40 | 90 | > th | dose independent | rect. | 9 | 7 |
| 994 | 57.32 | radiation | 40 | 10 | < th | dose independent | rect. | 9 | 23 |
| 997 | 57.32 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |