BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0131400 Os03g0131400|AK103714
(558 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17580.1 | chr2:7646507-7650066 FORWARD LENGTH=758 366 e-101
AT1G28090.1 | chr1:9795826-9798891 FORWARD LENGTH=542 283 2e-76
AT5G23690.1 | chr5:7987664-7990466 FORWARD LENGTH=528 280 2e-75
AT3G48830.1 | chr3:18103272-18110216 FORWARD LENGTH=882 259 3e-69
>AT2G17580.1 | chr2:7646507-7650066 FORWARD LENGTH=758
Length = 757
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/478 (42%), Positives = 281/478 (58%), Gaps = 21/478 (4%)
Query: 61 VDSSSWRYFDSRVVGITRGDIPRHAWTVLHMLKRKGFAAYLVGGCVRDLLLKRAPKDFDV 120
VD+S W+ + GI IP + VL +L+R+GF AYLVGGCVRDL+L R PKD+DV
Sbjct: 54 VDTSKWKKVRASDAGIKNSMIPESSMNVLRLLRRQGFDAYLVGGCVRDLILNRVPKDYDV 113
Query: 121 ITTASLQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNAN-------------- 166
ITTA L+QI+++ F R +IGKRFPIC V M G+ IEVSSF T A+
Sbjct: 114 ITTADLKQIRRL-FHRAQVIGKRFPICHVWMGGSIIEVSSFDTVAHSDSDLEKSKEKSGV 172
Query: 167 --HVKGSKNIGCSEEFKRYDEGDILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDIS 224
K +KN + + +D D W+NS++RDFTINSLF+NPF+F IYDY NG+ D++
Sbjct: 173 SLDTKANKNNSLFKMYSGWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLT 232
Query: 225 KNKVSTVIPARVSFKEDPXXXXXXXXXXXXXXFEFSSETSAAIRELSLSITDIDKARLMM 284
K+ T++PA +SFKED S + AI E S+ ++D+ RL+M
Sbjct: 233 DLKLRTLVPAHLSFKEDCARILRGLRIAARLGLSLSKDVKTAIPEFVSSVANLDQFRLIM 292
Query: 285 ELNYLLSYGAAASSLRLLRKYGLLDFLLPFQAAYMSDQMKDKSNDTXXXXXXXXXXXXXX 344
E+NY+L+YGAAA S+ LL K+ LL LLPFQAAY+ DQ S +
Sbjct: 293 EMNYMLAYGAAAPSILLLMKFKLLHVLLPFQAAYL-DQASKTSLSSSLMLVRLFSNMDKL 351
Query: 345 XSADQPCPSCLWLALLTFHSALVNSPHDAQVIRAFAALMYFGSWEGAVNFLNQDIGAPAP 404
S DQP LW+A+L FH ALV +P +A V+RAFAAL+Y G+W AV F + +
Sbjct: 352 VSCDQPADPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYHGNWSKAVEFAREHETSVIG 411
Query: 405 FIPETLGPSRSKL-ENLMEQTSHLASLVKSSVDTLTSIDALQQSLAKYSKASQVSGLVLV 463
+ PE SR + E+L E S L+K + LT +AL+++L Y + SGLV +
Sbjct: 412 YAPEVSKSSRKRSDEDLAEAVSEFTCLLKDTQYVLTDKEALREALYLYPDF-KFSGLVFI 470
Query: 464 SSRERERVLRIFEGLDTDLTSYEGTRGMQEIDYKLLKDGHPGEVRFVLGQVIMDTMSE 521
++ V F L +D+ SYE + IDY LL G+P EVRFVLG++I+DT++E
Sbjct: 471 PKKKGRDVAEGFMRL-SDVESYESQKEGFSIDYVLLGKGNPCEVRFVLGKIILDTITE 527
>AT1G28090.1 | chr1:9795826-9798891 FORWARD LENGTH=542
Length = 541
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/471 (35%), Positives = 254/471 (53%), Gaps = 26/471 (5%)
Query: 63 SSSWRYFDSRVVGITRGDIPRHAWTVLHMLKRKGFAAYLVGGCVRDLLLKRAPKDFDVIT 122
S W+ D+ GI R IP VL+ LK+KGF YLVGGCVRDL+L R PKDFDVIT
Sbjct: 79 SMPWKKLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVIT 138
Query: 123 TASLQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEFKR 182
TA L++++K VF C I+G+RFPIC V + IEVSSFST+A K ++ F+R
Sbjct: 139 TAELKEVRK-VFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAP-----NKSFRR 192
Query: 183 ---YDEGDILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFK 239
DE D + W+N ++RDFT+N L F+P +YDY+ GV D+ +KV TV A +SF
Sbjct: 193 PAGCDERDYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFV 252
Query: 240 EDPXXXXXXXXXXXXXXFEFSSETSAAIRELSLSITDIDKARLMMELNYLLSYGAAASSL 299
ED F + + + +++ELS S+ +D +R+ ME+NY+L+YG+A +SL
Sbjct: 253 EDTARILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASL 312
Query: 300 RLLRKYGLLDFLLPFQAAYMSDQMKDKSNDTXXXXXXXXXXXXXXXSADQPCPSCLWLAL 359
RLL ++GL++ LLP QA+Y+ Q + + + D+PC LW+ +
Sbjct: 313 RLLWRFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPCSEFLWIGI 372
Query: 360 LTFHSALVNSPHDAQVIRAFAALMYFG-SWEGAVNFLNQDIGAPAPFIPETLGPSRSKLE 418
L FH ALV+ P D V+ +F +Y S A+ + E P + +
Sbjct: 373 LAFHKALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELSSPEKDTAD 432
Query: 419 N---LMEQTSHLASLVKSSVDTLTSIDALQQSLAKYSKASQVSGLVLVSSRERERVLRIF 475
+ + +Q LA ++S+ L + D + +++KY +A S +V +S ERV ++F
Sbjct: 433 SESKISQQVIKLAESIRSAARKLNNRDYIANAMSKYPQAPG-SDMVFLSRLMLERVEKMF 491
Query: 476 EGLDT-------DLTSYEGTRGMQEIDYKLLKDGHPGEVRFVLGQVIMDTM 519
+ D+ S E + I+YK L G E R V +++ DT+
Sbjct: 492 GNVRRKGNQERDDVPSLE-----RRINYKSLALGDFHETRRVFARIVFDTI 537
>AT5G23690.1 | chr5:7987664-7990466 FORWARD LENGTH=528
Length = 527
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/467 (35%), Positives = 258/467 (55%), Gaps = 12/467 (2%)
Query: 66 WRYFDSRVVGITRGDIPRHAWTVLHMLKRKGFAAYLVGGCVRDLLLKRAPKDFDVITTAS 125
W+ +S+ +G++ I + VL+ LK KG YLVGGCVRDL+LKR PKDFD++T+A
Sbjct: 64 WKQLNSKDLGLSSSMIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAE 123
Query: 126 LQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEFKRYDE 185
L+++ + F RC I+G+RFPIC V++ IEVSSFST+A + + C E +
Sbjct: 124 LREVVR-TFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNSSRNTRTECKESSGSDGD 182
Query: 186 GDILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKEDPXXX 245
D + N ++RDFTIN L F+P+ +YDY+ G+ DI K KV TVI A SF +D
Sbjct: 183 EDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFHQDCARI 242
Query: 246 XXXXXXXXXXXFEFSSETSAAIRELSLSITDIDKARLMMELNYLLSYGAAASSLRLLRKY 305
F S ET+ I+ LSL + +DK R++ME+NY+L+YG+A +SLRLL K+
Sbjct: 243 LRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKF 302
Query: 306 GLLDFLLPFQAAYMSDQMKDKSNDTXXXXXXXXXXXXXXXSADQPCPSCLWLALLTFHSA 365
G+L+ LLP QAAY++ + + + D+PC S LW+A+L FH A
Sbjct: 303 GILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKA 362
Query: 366 LVNSPHDAQVIRAFA-ALMYFGSWEGAVNFLNQDIGAPAPFIPETLGPSRS-KLENLMEQ 423
L + P V+ AF+ A+ G AV + E + P + + L+++
Sbjct: 363 LADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTLLDE 422
Query: 424 TSHLASLVKSSVDTLTSIDALQQSLAKYSKASQVSGLVLVSSRERERVLRIFEGLDTDLT 483
L + ++ +++ +T + ++++ Y +A S LV + + R RIF+ + + T
Sbjct: 423 VMDLDASIEDALNQMTDAYFISKAMSAYPQAP-YSDLVFIPLQLYLRAGRIFDCVKNEET 481
Query: 484 --SYEGTRGMQEIDYKLLKDGHPGEVRFVLGQVIMDT-----MSEEL 523
+E +G +I+Y L G+ E+R V +V+ DT +S+EL
Sbjct: 482 RIGFEAKQG-SKIEYGSLNSGYFPEIRHVFARVVFDTVFPLNLSQEL 527
>AT3G48830.1 | chr3:18103272-18110216 FORWARD LENGTH=882
Length = 881
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 226/416 (54%), Gaps = 6/416 (1%)
Query: 63 SSSWRYFDSRVVGITRGDIPRHAWTVLHMLKRKGFAAYLVGGCVRDLLLKRAPKDFDVIT 122
+ W+ +S+ +GIT I + VL+ LK KG+ YLVGGCVRDL+LKR PKDFD++T
Sbjct: 58 APEWKKLNSKDLGITTSMISKPTRIVLNGLKSKGYDVYLVGGCVRDLILKRTPKDFDILT 117
Query: 123 TASLQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEFKR 182
+A L+++ + F RC IIGK+FPIC V++ IEVSSFST+A + + G +
Sbjct: 118 SAELREVVRS-FSRCEIIGKKFPICHVHIGNDMIEVSSFSTSAQNSLRNTRTGSGKSNGS 176
Query: 183 YDEGDILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKEDP 242
YDE D + + N ++RDFTIN L F+P+ IYDY+ G+ DI K KV TV A SF+ED
Sbjct: 177 YDE-DSIRFNNCLQRDFTINGLMFDPYAKVIYDYLGGIEDIKKAKVRTVFHAGTSFQEDS 235
Query: 243 XXXXXXXXXXXXXXFEFSSETSAAIRELSLSITDIDKARLMMELNYLLSYGAAASSLRLL 302
F S ET+ ++ LS + + + R+++E+NY+L+YG+A +SLRLL
Sbjct: 236 ARILRGTRIAARLGFTISKETAHFLKNLSFLVQRLHRGRILLEMNYMLAYGSAEASLRLL 295
Query: 303 RKYGLLDFLLPFQAAYMSDQMKDKSNDTXXXXXXXXXXXXXXXSADQPCPSCLWLALLTF 362
K+G+L+ LLP QAAY+ + + + D+PC S LWL +L
Sbjct: 296 WKFGILEILLPIQAAYLVRTGFKRRDKRSNLLLSLFGNLDKLLAPDKPCHSSLWLTILAL 355
Query: 363 HSALVNSPHDAQVIRAFAALMYFGS--WEGAVNFLNQDIGAPAPFIPETLGPSRSKLENL 420
H AL + P V+ AF+ ++ G E N F E L P + L
Sbjct: 356 HKALADQPRYPSVVAAFSLAVHNGGDVLEAVKNTRKVTKPHNRSFF-ELLEPEEMDSQTL 414
Query: 421 MEQTSHLASLVKSSVDTLTSIDALQQSLAKYSKASQVSGLVLVSSRERERVLRIFE 476
+++ S +K ++ +T + +++A Y +A S +V + + RIFE
Sbjct: 415 LDEVMDFDSSIKEALGQMTDGRFISKAMAAYPQAP-YSDMVFIPLQLYLDARRIFE 469
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,999,754
Number of extensions: 379122
Number of successful extensions: 958
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 943
Number of HSP's successfully gapped: 4
Length of query: 558
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 454
Effective length of database: 8,255,305
Effective search space: 3747908470
Effective search space used: 3747908470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)