Os03g0129200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide binding protein, PINc domain containing protein.
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Os03g0129200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide binding protein, PINc domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.06 | 0.221 | 11.5 | 0.359 | 0.224 | 0.508 | -0.403 | 0.719 | 0.174 | 9.57 | 20.8 | 1407 | -- | -- |
| 22.96 | 0.223 | 11.5 | 0.212 | 0.225 | 0.42 | -0.405 | -- | 0.141 | 9.36 | 21.3 | 1570 | -- | -- |
| 22.66 | 0.222 | 11.5 | 0.351 | 0.224 | 0.509 | -- | 0.746 | 0.172 | 9.74 | 20.88 | 1378 | -- | -- |
| 23.66 | 0.227 | 11.5 | 0.205 | 0.217 | 0.408 | -- | -- | 0.138 | 9.51 | 21.2 | 1570 | -- | -- |
| 25.61 | 0.236 | 11.5 | 0.341 | -- | 0.496 | -- | 0.679 | 0.176 | -- | 21 | 1492 | -- | -- |
| 27.47 | 0.246 | 11.5 | 0.391 | 0.217 | -- | -0.447 | -- | 0.247 | 9.32 | -- | -- | -- | -- |
| 28.18 | 0.249 | 11.5 | 0.376 | 0.218 | -- | -- | -- | 0.247 | 9.49 | -- | -- | -- | -- |
| 26.48 | 0.24 | 11.6 | 0.203 | -- | 0.408 | -- | -- | 0.14 | -- | 21.2 | 1571 | -- | -- |
| 24.55 | 0.231 | 11.5 | -- | 0.203 | 0.479 | -- | -- | 0.124 | 9.78 | 20.8 | 1574 | -- | -- |
| 30.97 | 0.26 | 11.5 | 0.374 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 31.9 | 0.264 | 11.5 | -- | 0.217 | -- | -- | -- | 0.205 | 9.36 | -- | -- | -- | -- |
| 27.27 | 0.243 | 11.6 | -- | -- | 0.524 | -- | -- | 0.109 | -- | 20.9 | 1572 | -- | -- |
| 34.66 | 0.275 | 11.5 | -- | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.00 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 2 | 22.00 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 3 | 22.05 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 9 |
| 5 | 22.08 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 6 | 22.09 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 8 | 22.11 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 17 | 22.19 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 18 | 22.19 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 22 | 22.21 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 34 | 22.25 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 36 | 22.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 63 | 22.35 | temperature | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 95 | 22.42 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 144 | 22.50 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 164 | 22.54 | temperature | 20.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 182 | 22.57 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 184 | 22.57 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 254 | 22.63 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 322 | 22.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 341 | 22.73 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 345 | 22.74 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 383 | 22.77 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 404 | 22.80 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 414 | 22.80 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 415 | 22.81 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 434 | 22.82 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 440 | 22.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 448 | 22.84 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 455 | 22.84 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 464 | 22.85 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 475 | 22.86 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 476 | 22.86 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 477 | 22.86 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 504 | 22.89 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 521 | 22.89 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 600 | 22.96 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 605 | 22.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 645 | 23.00 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 652 | 23.00 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 715 | 23.05 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 725 | 23.06 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 735 | 23.07 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 736 | 23.07 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 746 | 23.08 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 10 |
| 753 | 23.08 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 801 | 23.11 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 876 | 23.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 889 | 23.16 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 946 | 23.20 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 985 | 23.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 18 |