Os03g0126700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Barley stem rust resistance protein.
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Os03g0126700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Barley stem rust resistance protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.65 | 0.742 | 7.81 | -1.1 | 4.06 | -1.66 | 1.23 | 0.761 | -1.06 | 7.76 | 1009 | 20 | 3.05 | -- |
| 250.6 | 0.737 | 7.8 | -1.11 | 4.13 | -1.66 | 1.3 | -- | -1.06 | 7.77 | 1009 | 41 | 3.04 | -- |
| 252.49 | 0.74 | 7.8 | -1.03 | 4.22 | -1.59 | -- | 0.943 | -1.03 | 7.87 | 1009 | 41 | 2.67 | -- |
| 255.52 | 0.744 | 7.81 | -1.1 | 4.16 | -1.67 | -- | -- | -1.07 | 7.77 | 1009 | 41 | 2.97 | -- |
| 887.54 | 1.4 | 7.89 | -0.984 | -- | -2.03 | -- | 0.993 | -0.946 | -- | 1009 | 9 | 4.56 | -- |
| 294.92 | 0.805 | 7.79 | -1.16 | 3.88 | -- | 0.824 | -- | -0.98 | 9.22 | -- | -- | -- | -- |
| 297.34 | 0.808 | 7.79 | -1.13 | 3.87 | -- | -- | -- | -0.979 | 9.22 | -- | -- | -- | -- |
| 291.74 | 0.799 | 7.9 | -1.03 | -- | -3.87 | -- | -- | -0.948 | -- | 1016 | 3 | 8.74 | -- |
| 286.47 | 0.788 | 7.78 | -- | 4.19 | -1.67 | -- | -- | -0.964 | 7.8 | 1009 | 74 | 3.11 | -- |
| 1167.83 | 1.6 | 7.9 | -1.14 | -- | -- | -- | -- | -0.96 | -- | -- | -- | -- | -- |
| 330.8 | 0.851 | 7.77 | -- | 3.87 | -- | -- | -- | -0.853 | 9.24 | -- | -- | -- | -- |
| 319.34 | 0.832 | 7.88 | -- | -- | -3.91 | -- | -- | -0.854 | -- | 1016 | 2 | 8.76 | -- |
| 1202.19 | 1.62 | 7.87 | -- | -- | -- | -- | -- | -0.834 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 238.72 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 10 |
| 9 | 244.99 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 10 |
| 13 | 247.78 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 14 | 247.84 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 16 | 248.31 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 23 | 10 |
| 20 | 248.96 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 21 | 248.96 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 27 | 249.73 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 56 | 252.21 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 21 |
| 59 | 252.44 | atmosphere | 1010 | 30 | < th | dose dependent | sin | 7 | NA |
| 69 | 252.80 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 7 | NA |
| 70 | 252.81 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 18 | 10 |
| 88 | 253.82 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 24 | 13 |
| 91 | 253.89 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 108 | 254.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 119 | 255.10 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 16 | 11 |
| 122 | 255.22 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 169 | 256.73 | wind | 7 | 720 | < th | dose independent | rect. | 21 | 10 |
| 172 | 256.79 | wind | 7 | 720 | < th | dose independent | rect. | 19 | 14 |
| 193 | 257.29 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 199 | 257.50 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 8 |
| 201 | 257.55 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 213 | 257.82 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 5 |
| 223 | 258.09 | temperature | 15 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 235 | 258.34 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 4 | 21 |
| 239 | 258.42 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 246 | 258.56 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 23 |
| 254 | 258.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 263 | 258.88 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 284 | 259.22 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 309 | 259.62 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 19 | 17 |
| 318 | 259.76 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 320 | 259.80 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 362 | 260.49 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 4 | 5 |
| 372 | 260.64 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 379 | 260.77 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 3 |
| 391 | 260.90 | wind | 5 | 720 | < th | dose independent | rect. | 21 | 1 |
| 439 | 261.28 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 22 | 14 |
| 441 | 261.33 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 7 | 23 |
| 461 | 261.57 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 475 | 261.68 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 7 | 20 |
| 480 | 261.69 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 496 | 261.81 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 12 | 21 |
| 502 | 261.87 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 21 | 12 |
| 513 | 262.01 | temperature | 10 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 535 | 262.20 | wind | 7 | 720 | < th | dose independent | rect. | 19 | 5 |
| 545 | 262.25 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 555 | 262.32 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 3 | 4 |
| 613 | 262.74 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 9 | 19 |
| 618 | 262.76 | atmosphere | 1010 | 10 | < th | dose independent | sin | 9 | NA |
| 622 | 262.77 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 635 | 262.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 645 | 262.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 646 | 262.94 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 655 | 262.99 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 677 | 263.11 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 3 |
| 703 | 263.21 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 10 |
| 714 | 263.29 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 732 | 263.37 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 734 | 263.39 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 20 | 7 |
| 753 | 263.48 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 3 |
| 790 | 263.69 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 820 | 263.89 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 18 | 10 |
| 821 | 263.90 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 21 | 1 |
| 839 | 264.01 | wind | 1 | 90 | < th | dose independent | rect. | 17 | 11 |
| 847 | 264.05 | wind | 1 | 90 | < th | dose independent | rect. | 20 | 8 |
| 850 | 264.06 | wind | 1 | 90 | < th | dose independent | rect. | 7 | 21 |
| 852 | 264.07 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 5 |
| 870 | 264.19 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 4 | 1 |
| 872 | 264.21 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 874 | 264.21 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 901 | 264.34 | wind | 5 | 90 | < th | dose independent | rect. | 21 | 12 |
| 920 | 264.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 938 | 264.50 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |
| 979 | 264.72 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 16 | 3 |
| 981 | 264.73 | wind | 7 | 720 | < th | dose independent | rect. | 19 | 12 |
| 993 | 264.81 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 4 |