BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0126700 Os03g0126700|AK099929
(195 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01490.1 | chr1:180401-182066 REVERSE LENGTH=178 93 9e-20
AT5G52760.1 | chr5:21386919-21387540 FORWARD LENGTH=127 49 1e-06
AT5G26690.1 | chr5:9310905-9311411 FORWARD LENGTH=115 49 2e-06
AT5G52740.1 | chr5:21382530-21383180 FORWARD LENGTH=119 48 2e-06
AT5G52750.1 | chr5:21384134-21384795 FORWARD LENGTH=140 48 4e-06
AT3G05920.1 | chr3:1768991-1769522 REVERSE LENGTH=127 47 7e-06
>AT1G01490.1 | chr1:180401-182066 REVERSE LENGTH=178
Length = 177
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 54/61 (88%), Gaps = 1/61 (1%)
Query: 3 KKIVVKLDLHDNKDKQKAMKVVSTLAGIDAISMDMASRKMTVIGTVDPVNVVSKLRKASW 62
KKIV+KLDLHD++ KQKA+K VSTL GID+I+MDM +K+TVIGTVDPVNVVSKLRK W
Sbjct: 2 KKIVLKLDLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRK-YW 60
Query: 63 P 63
P
Sbjct: 61 P 61
>AT5G52760.1 | chr5:21386919-21387540 FORWARD LENGTH=127
Length = 126
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 SKKIVVKLDLHDNKDKQKAMKVVSTLAGIDAISMDMASRKMTVIGTVDPVNVVSKLRK 59
+K V++L +H+ + ++KA+ VS +G+ +I+MD S KMT++G VD VV KLRK
Sbjct: 3 AKNAVLQLSIHEERTRKKALVTVSRFSGVTSITMD-KSGKMTIVGEVDVPAVVMKLRK 59
>AT5G26690.1 | chr5:9310905-9311411 FORWARD LENGTH=115
Length = 114
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 2 SKKIVVKLDLHDNKDKQKAMKVVSTLAGIDAISMDMASRKMTVIGTVDPVNVVSKLRK 59
+KKI +K+D+ K K M+ V+ L G++ +S+D +TV+GT+DPV V +L+K
Sbjct: 3 TKKIEIKVDIDCEKCKHAIMEAVTELEGVNIVSLDQEKSILTVVGTMDPVCVAEQLKK 60
>AT5G52740.1 | chr5:21382530-21383180 FORWARD LENGTH=119
Length = 118
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 5 IVVKLDLHDNKDKQKAMKVVSTLAGIDAISMDMASRKMTVIGTVDPVNVVSKLRKASWPA 64
+V+KLD+H K KQKAM V L+G++ S+++ K+TV G +D +V KL+K
Sbjct: 4 VVLKLDVHCEKTKQKAMSTVCCLSGVN--SVEVKDGKLTVTGEIDAYMIVKKLKKICHTE 61
Query: 65 YI 66
+I
Sbjct: 62 FI 63
>AT5G52750.1 | chr5:21384134-21384795 FORWARD LENGTH=140
Length = 139
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 4 KIVVKLDLHDNKDKQKAMKVVSTLAGIDAISMDMASRKMTVIGTVDPVNVVSKLRK 59
K V++L +H+ + ++KA VS G+ +I+MD + KMTV+G VD +V KLRK
Sbjct: 5 KAVLQLSIHEERIRKKAFVTVSRCPGVTSITMDDKTGKMTVVGEVDVPVIVMKLRK 60
>AT3G05920.1 | chr3:1768991-1769522 REVERSE LENGTH=127
Length = 126
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 39/57 (68%)
Query: 3 KKIVVKLDLHDNKDKQKAMKVVSTLAGIDAISMDMASRKMTVIGTVDPVNVVSKLRK 59
KK+ +K+D++ K M+ V+ + G++ IS+D + +TV+GT+DPV V ++L+K
Sbjct: 4 KKVEIKVDINCGKCNSAIMEAVTEIEGVNHISLDEGNSILTVVGTMDPVCVATRLKK 60
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,648,529
Number of extensions: 33547
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 7
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)