Os03g0125700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0125700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.57 | 0.268 | 9.93 | 0.523 | 0.632 | -1.52 | -0.483 | 0.571 | 0.352 | 0.606 | 25.03 | 1577 | -- | -- |
| 32.46 | 0.265 | 9.91 | 0.613 | 0.635 | -1.56 | -0.48 | -- | 0.408 | 0.533 | 23.99 | 1670 | -- | -- |
| 33.39 | 0.269 | 9.94 | 0.518 | 0.627 | -1.53 | -- | 0.565 | 0.347 | 0.659 | 24.67 | 1644 | -- | -- |
| 33.42 | 0.269 | 9.91 | 0.634 | 0.644 | -1.61 | -- | -- | 0.394 | 0.7 | 23.87 | 1684 | -- | -- |
| 46.63 | 0.318 | 9.95 | 0.37 | -- | -1.6 | -- | 1.42 | 0.282 | -- | 28.5 | 987 | -- | -- |
| 65.61 | 0.38 | 9.84 | 1.11 | 0.642 | -- | -0.452 | -- | 0.704 | 0.724 | -- | -- | -- | -- |
| 66.48 | 0.382 | 9.84 | 1.12 | 0.643 | -- | -- | -- | 0.706 | 0.726 | -- | -- | -- | -- |
| 48.35 | 0.324 | 9.91 | 0.664 | -- | -1.65 | -- | -- | 0.355 | -- | 27.6 | 983 | -- | -- |
| 38.83 | 0.29 | 9.94 | -- | 0.618 | -1.83 | -- | -- | 0.285 | 0.729 | 22.37 | 3243 | -- | -- |
| 92.37 | 0.449 | 9.83 | 1.15 | -- | -- | -- | -- | 0.718 | -- | -- | -- | -- | -- |
| 99.83 | 0.467 | 9.87 | -- | 0.661 | -- | -- | -- | 0.581 | 0.805 | -- | -- | -- | -- |
| 58.17 | 0.355 | 9.94 | -- | -- | -1.95 | -- | -- | 0.219 | -- | 27.6 | 1004 | -- | -- |
| 127.14 | 0.526 | 9.86 | -- | -- | -- | -- | -- | 0.59 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 13 | 32.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 35 | 32.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 37 | 32.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 43 | 32.76 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 65 | 32.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 11 |
| 80 | 32.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 7 |
| 90 | 33.00 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 132 | 33.20 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 137 | 33.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 141 | 33.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 144 | 33.24 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 191 | 33.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 249 | 33.62 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 261 | 33.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 266 | 33.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 2 |
| 410 | 34.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 422 | 34.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 592 | 34.72 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 637 | 34.82 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 757 | 35.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 781 | 35.12 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 860 | 35.28 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 884 | 35.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 899 | 35.34 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 929 | 35.39 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 977 | 35.47 | temperature | 25 | 270 | < th | dose dependent | sin | 19 | NA |