BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0125700 Os03g0125700|AK062913
         (107 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41560.1  | chr5:16621427-16622619 REVERSE LENGTH=102           98   8e-22

>AT5G41560.1 | chr5:16621427-16622619 REVERSE LENGTH=102
          Length = 101

 Score = 98.2 bits (243), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 2/92 (2%)

Query: 1  MESSLGGWPSYNPQNFSQVVPADPSAQPLNVVPATYIATH-RTDPPPGQVITTDPKNILL 59
          M S LG  PS++P NFSQ  P+DPS  P  +VP TY  TH RT PPP QVITT+ KNIL+
Sbjct: 1  MASILGDLPSFDPHNFSQHRPSDPS-NPSKMVPTTYRPTHNRTLPPPDQVITTEVKNILI 59

Query: 60 RHFYQKSEEKLRPKRAAPDNLTPQNNGKQPRG 91
          R FYQ++EEKLRPKR A D+L  ++  K  R 
Sbjct: 60 RSFYQRAEEKLRPKRPATDHLAAEHVNKHFRA 91



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,820,770
Number of extensions: 119141
Number of successful extensions: 278
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 105 (45.1 bits)