Os03g0125000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L5, chloroplast.
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Os03g0125000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L5, chloroplast.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.16 | 0.47 | 13.8 | -0.153 | 1.9 | 1.2 | -0.155 | 0.509 | -0.414 | 22.7 | 25.1 | 121 | -- | -- |
| 100.21 | 0.466 | 13.8 | -0.205 | 1.91 | 1.25 | -0.168 | -- | -0.416 | 22.7 | 25.3 | 122 | -- | -- |
| 100.24 | 0.466 | 13.8 | -0.145 | 1.9 | 1.2 | -- | 0.532 | -0.411 | 22.7 | 25.2 | 122 | -- | -- |
| 100.35 | 0.467 | 13.8 | -0.206 | 1.9 | 1.26 | -- | -- | -0.42 | 22.7 | 25.3 | 122 | -- | -- |
| 234.75 | 0.714 | 13.8 | -0.279 | -- | 1.84 | -- | 0.812 | -0.619 | -- | 21.6 | 738 | -- | -- |
| 125.52 | 0.525 | 13.8 | -0.0145 | 1.87 | -- | -0.217 | -- | -0.34 | 21.7 | -- | -- | -- | -- |
| 125.7 | 0.525 | 13.8 | -0.00626 | 1.87 | -- | -- | -- | -0.34 | 21.6 | -- | -- | -- | -- |
| 232.16 | 0.71 | 13.8 | -0.439 | -- | 1.89 | -- | -- | -0.575 | -- | 23.74 | 750 | -- | -- |
| 101.42 | 0.469 | 13.8 | -- | 1.9 | 1.2 | -- | -- | -0.395 | 22.6 | 25.3 | 122 | -- | -- |
| 332.86 | 0.853 | 13.7 | 0.00952 | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
| 125.7 | 0.524 | 13.8 | -- | 1.87 | -- | -- | -- | -0.339 | 21.6 | -- | -- | -- | -- |
| 236.84 | 0.717 | 13.8 | -- | -- | 1.8 | -- | -- | -0.506 | -- | 23.9 | 740 | -- | -- |
| 332.86 | 0.852 | 13.7 | -- | -- | -- | -- | -- | -0.344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.47 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 2 | 89.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 10 |
| 3 | 89.58 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 9 |
| 15 | 91.37 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 19 | 91.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 20 | 91.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 29 | 92.14 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 32 | 92.30 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 9 |
| 45 | 92.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 79 | 94.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 83 | 94.09 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 86 | 94.20 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 99 | 94.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 116 | 94.66 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 139 | 95.09 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 16 |
| 211 | 95.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 300 | 96.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 370 | 97.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 472 | 98.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 541 | 98.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 720 | 99.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 23 |