BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0125000 Os03g0125000|AK070779
         (279 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01310.1  | chr4:544166-545480 REVERSE LENGTH=263              294   3e-80

>AT4G01310.1 | chr4:544166-545480 REVERSE LENGTH=263
          Length = 262

 Score =  294 bits (753), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 135/219 (61%), Positives = 175/219 (79%), Gaps = 2/219 (0%)

Query: 63  GIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVNCGLGAEAGNSK 122
           G VLV+ +EA+K  RLK  Y ++++P + EEF Y N+HQVPKV+KIVVNCG+G  A N K
Sbjct: 44  GTVLVEKSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDK 103

Query: 123 GLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDRLINLGL 182
           GLE+AMKD+A+ITGQ P+KT+A+ S+A+FKIRE   +GIAVTLRG VM++FLDRLINL L
Sbjct: 104 GLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLAL 163

Query: 183 PRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKNGMDVCIVTTAKTDNEALR 242
           PRT DF GV+P+SFDG+GN++IG++DQGVFPEI ++  GK  GMDVCI TTAK+D E  +
Sbjct: 164 PRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTAKSDQEGQK 223

Query: 243 LLTLLGMPFAEHIKSS--VVIRKKRLKRHHFMSKGRGRR 279
           LL L+GMPF E    S   ++RKK+LK HHF +KG+G+R
Sbjct: 224 LLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGKR 262



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,091,731
Number of extensions: 198515
Number of successful extensions: 408
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)