Os03g0123100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SUMO E2 conjugating enzyme SCE1.
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Os03g0123100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SUMO E2 conjugating enzyme SCE1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.22 | 0.195 | 13.2 | -0.755 | 0.568 | -0.879 | 0.0624 | 0.617 | -0.045 | 23.9 | 24.82 | 10 | -- | -- |
| 17.73 | 0.198 | 13.2 | -0.658 | 0.58 | -0.929 | 0.26 | -- | -0.0258 | 23.9 | 24.82 | 10 | -- | -- |
| 17.21 | 0.195 | 13.2 | -0.766 | 0.569 | -0.873 | -- | 0.675 | -0.0478 | 23.9 | 24.83 | 10 | -- | -- |
| 18 | 0.199 | 13.2 | -0.67 | 0.574 | -0.933 | -- | -- | -0.0231 | 23.9 | 24.63 | 10 | -- | -- |
| 26.62 | 0.24 | 13.2 | -0.964 | -- | -0.712 | -- | 1.07 | -0.068 | -- | 28.72 | 2348 | -- | -- |
| 30.49 | 0.259 | 13.1 | -0.44 | 0.413 | -- | 0.291 | -- | 0.149 | 23.3 | -- | -- | -- | -- |
| 30.85 | 0.26 | 13.1 | -0.453 | 0.411 | -- | -- | -- | 0.148 | 23.4 | -- | -- | -- | -- |
| 26.94 | 0.242 | 13.2 | -0.709 | -- | -0.944 | -- | -- | -0.0348 | -- | 28.7 | 878 | -- | -- |
| 28.36 | 0.249 | 13.1 | -- | 0.512 | -0.786 | -- | -- | 0.119 | 23.7 | 22.73 | 2 | -- | -- |
| 41.44 | 0.301 | 13.1 | -0.442 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 36.25 | 0.282 | 13.1 | -- | 0.406 | -- | -- | -- | 0.198 | 23.4 | -- | -- | -- | -- |
| 38.73 | 0.29 | 13.1 | -- | -- | -0.651 | -- | -- | 0.0885 | -- | 29.5 | 845 | -- | -- |
| 46.59 | 0.319 | 13.1 | -- | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.50 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 4 | 16.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 7 | 17.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 17.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 11 | 17.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 13 | 17.23 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 14 | 17.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 15 | 17.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 16 | 17.27 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 20 | 17.27 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 25 | 17.28 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 26 | 17.28 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 29 | 17.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 37 | 17.32 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 51 | 17.43 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 64 | 17.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 68 | 17.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 82 | 17.66 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 122 | 17.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 127 | 17.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 138 | 17.83 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 141 | 17.83 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 151 | 17.84 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 176 | 17.87 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 23 |
| 188 | 17.88 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 195 | 17.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 214 | 17.90 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 291 | 17.95 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 292 | 17.95 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 453 | 18.03 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 454 | 18.03 | temperature | 15 | 90 | > th | dose dependent | sin | 10 | NA |
| 458 | 18.03 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 479 | 18.04 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 493 | 18.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 516 | 18.06 | temperature | 15 | 90 | > th | dose dependent | sin | 12 | NA |
| 518 | 18.06 | temperature | 10 | 4320 | > th | dose dependent | sin | 15 | NA |
| 540 | 18.07 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 541 | 18.07 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 577 | 18.08 | temperature | 30 | 90 | < th | dose dependent | sin | 11 | NA |
| 610 | 18.09 | humidity | 80 | 43200 | < th | dose dependent | sin | 8 | NA |
| 667 | 18.11 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 674 | 18.11 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 697 | 18.11 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 700 | 18.11 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 702 | 18.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 739 | 18.12 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 23 |
| 752 | 18.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 969 | 18.19 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 22 |