Os03g0121800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Double-stranded RNA binding domain containing protein.
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Os03g0121800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Double-stranded RNA binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.68 | 0.307 | 11.7 | 0.232 | 0.937 | -0.908 | 0.204 | 5.52 | -0.155 | 5.61 | 24.92 | 3246 | -- | -- |
| 48.57 | 0.327 | 11.9 | -1.09 | 0.838 | -0.87 | -0.155 | -- | -0.374 | 6.77 | 6.782 | 23223 | -- | -- |
| 42.72 | 0.304 | 11.7 | 0.315 | 0.935 | -0.977 | -- | 6.16 | -0.168 | 5.63 | 25.5 | 3253 | -- | -- |
| 48.37 | 0.326 | 11.9 | -1.09 | 0.835 | -0.788 | -- | -- | -0.373 | 6.79 | 16.76 | 23330 | -- | -- |
| 79.82 | 0.418 | 11.9 | -0.955 | -- | -1.1 | -- | 1.39 | -0.388 | -- | 25.5 | 3253 | -- | -- |
| 55.7 | 0.35 | 11.9 | -1.26 | 0.962 | -- | 0.0935 | -- | -0.495 | 5.84 | -- | -- | -- | -- |
| 55.73 | 0.35 | 11.9 | -1.26 | 0.962 | -- | -- | -- | -0.495 | 5.85 | -- | -- | -- | -- |
| 80.59 | 0.42 | 11.9 | -1.1 | -- | -0.999 | -- | -- | -0.425 | -- | 25.5 | 3253 | -- | -- |
| 55.54 | 0.347 | 11.8 | -- | 0.968 | -1.04 | -- | -- | -0.0437 | 5.77 | 7.081 | 47520 | -- | -- |
| 103.74 | 0.476 | 11.9 | -1.23 | -- | -- | -- | -- | -0.473 | -- | -- | -- | -- | -- |
| 97.5 | 0.462 | 11.9 | -- | 0.943 | -- | -- | -- | -0.355 | 5.91 | -- | -- | -- | -- |
| 104.16 | 0.475 | 11.8 | -- | -- | -1.01 | -- | -- | -0.0342 | -- | 6.448 | 47520 | -- | -- |
| 143.63 | 0.559 | 11.9 | -- | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 2 | 41.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 7 | 42.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 10 |
| 13 | 42.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 19 | 42.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 20 | 42.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 29 | 42.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 43 | 42.33 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 48 | 42.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 55 | 42.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 58 | 42.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 98 | 42.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 100 | 42.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 102 | 42.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 109 | 42.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 131 | 42.86 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 182 | 43.09 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 183 | 43.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 184 | 43.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 8 |
| 185 | 43.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 20 |
| 191 | 43.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 193 | 43.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 199 | 43.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 16 |
| 202 | 43.14 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 207 | 43.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 212 | 43.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 18 |
| 227 | 43.18 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 258 | 43.20 | temperature | 25 | 4320 | > th | dose dependent | sin | 19 | NA |
| 259 | 43.20 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 265 | 43.20 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 14 |
| 292 | 43.22 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 22 |
| 311 | 43.23 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 19 |
| 330 | 43.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 15 |
| 344 | 43.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 353 | 43.28 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 355 | 43.28 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 368 | 43.29 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 381 | 43.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 23 |
| 414 | 43.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 419 | 43.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 21 |
| 433 | 43.31 | radiation | 40 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 455 | 43.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 487 | 43.33 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 498 | 43.34 | radiation | 20 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 504 | 43.34 | radiation | 20 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 523 | 43.35 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 589 | 43.38 | radiation | 40 | 43200 | > th | dose dependent | sin | 16 | NA |
| 610 | 43.39 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 653 | 43.41 | radiation | 40 | 43200 | < th | dose independent | rect. | 12 | 20 |
| 716 | 43.43 | radiation | 20 | 43200 | < th | dose independent | no | NA | NA |
| 722 | 43.43 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 968 | 43.46 | radiation | 10 | 43200 | > th | dose dependent | sin | 11 | NA |
| 986 | 43.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |