BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0121800 Os03g0121800|J075058G08
         (165 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01040.2  | chr1:23519-31079 FORWARD LENGTH=1911               237   2e-63
AT3G20420.1  | chr3:7119371-7120895 REVERSE LENGTH=392             54   4e-08

>AT1G01040.2 | chr1:23519-31079 FORWARD LENGTH=1911
          Length = 1910

 Score =  237 bits (604), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 128/169 (75%), Gaps = 13/169 (7%)

Query: 1    ERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLA------------- 47
            ERCQQQAEGLEYKASR+GN ATVEVF+DGVQ+GVAQNPQKKMAQKLA             
Sbjct: 1741 ERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEI 1800

Query: 48   ARNALVVLXXXXXXXXXXXXRDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPA 107
            A +    +             +G KKNG Q FTRQTLNDICLR+ WPMP YRCV EGGPA
Sbjct: 1801 AESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPA 1860

Query: 108  HAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNRDF 156
            HAKRF + VRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLN+ F
Sbjct: 1861 HAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKTF 1909



>AT3G20420.1 | chr3:7119371-7120895 REVERSE LENGTH=392
          Length = 391

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 3   CQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLXXXXXXX 62
           C +  + ++ K  + GN++   +++D   +   +   K +A+ +AA+ AL  L       
Sbjct: 240 CHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEVFPVE 299

Query: 63  XXXXXRDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSD 122
                 D +         +  LN+ICL+++WP P Y    +      KRFV S ++  ++
Sbjct: 300 MVI---DEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSVQGKRFVCSAKIKITE 356

Query: 123 RGWTDECIGEPMPSVKKAKDSAAVLLLELLNR 154
              T    G+    +KKA+ S+A  ++  L +
Sbjct: 357 EK-TLYMKGDEQSKIKKAESSSAYHMIRALRK 387



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,222,513
Number of extensions: 115760
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 4
Length of query: 165
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 74
Effective length of database: 8,611,713
Effective search space: 637266762
Effective search space used: 637266762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)