Os03g0119000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prolyl 4-hydroxylase, alpha subunit domain containing protein.
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Os03g0119000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prolyl 4-hydroxylase, alpha subunit domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.77 | 0.204 | 10.9 | -0.836 | 0.0973 | -0.0678 | 0.182 | -1.22 | -0.199 | 21.8 | 20.3 | 1921 | -- | -- |
| 20.34 | 0.212 | 10.8 | -0.658 | 0.116 | 0.305 | -0.0433 | -- | -0.155 | 23.4 | 18.21 | 1680 | -- | -- |
| 18.85 | 0.202 | 10.9 | -0.831 | 0.1 | -0.0626 | -- | -1.19 | -0.197 | 22.5 | 20.2 | 1852 | -- | -- |
| 20.03 | 0.208 | 10.8 | -0.751 | 0.077 | 0.438 | -- | -- | -0.163 | 22 | 16.3 | 5986 | -- | -- |
| 19.43 | 0.205 | 10.9 | -0.837 | -- | -0.0507 | -- | -1.18 | -0.201 | -- | 20.2 | 1854 | -- | -- |
| 21.7 | 0.218 | 10.8 | -0.58 | 0.0922 | -- | 0.0911 | -- | -0.13 | 22.4 | -- | -- | -- | -- |
| 21.73 | 0.218 | 10.8 | -0.584 | 0.0917 | -- | -- | -- | -0.131 | 22.9 | -- | -- | -- | -- |
| 20.5 | 0.211 | 10.8 | -0.747 | -- | 0.417 | -- | -- | -0.172 | -- | 16.1 | 5961 | -- | -- |
| 23.5 | 0.226 | 10.8 | -- | 0.0986 | -0.422 | -- | -- | 0.0446 | 22.7 | 19.4 | 34009 | -- | -- |
| 22.25 | 0.22 | 10.8 | -0.583 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 30.73 | 0.259 | 10.8 | -- | 0.0876 | -- | -- | -- | -0.0654 | 22.4 | -- | -- | -- | -- |
| 23.17 | 0.224 | 10.8 | -- | -- | -0.415 | -- | -- | 0.0795 | -- | 22.02 | 47520 | -- | -- |
| 31.2 | 0.261 | 10.8 | -- | -- | -- | -- | -- | -0.0653 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 2 | 18.11 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 3 | 18.11 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 4 | 18.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 5 | 18.12 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 9 | 18.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 10 | 18.13 | wind | 9 | 14400 | > th | dose dependent | sin | 9 | NA |
| 12 | 18.18 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 27 | 18.27 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 28 | 18.27 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 33 | 18.28 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 34 | 18.29 | wind | 9 | 14400 | > th | dose independent | sin | 9 | NA |
| 38 | 18.29 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 40 | 18.29 | wind | 7 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 46 | 18.30 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 47 | 18.30 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 56 | 18.31 | wind | 7 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 58 | 18.32 | wind | 9 | 14400 | < th | dose independent | sin | 9 | NA |
| 60 | 18.32 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 85 | 18.35 | wind | 7 | 4320 | > th | dose dependent | rect. | 19 | 17 |
| 91 | 18.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 116 | 18.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 129 | 18.43 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 173 | 18.48 | wind | 3 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 174 | 18.48 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 175 | 18.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 176 | 18.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 184 | 18.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 185 | 18.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 188 | 18.50 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 194 | 18.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 8 | 14 |
| 211 | 18.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 222 | 18.53 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 226 | 18.53 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 227 | 18.54 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 231 | 18.54 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 238 | 18.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 242 | 18.55 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 255 | 18.56 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 281 | 18.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 284 | 18.59 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 302 | 18.60 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 304 | 18.60 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 322 | 18.61 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 349 | 18.62 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 355 | 18.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 378 | 18.64 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 401 | 18.65 | temperature | 15 | 720 | > th | dose dependent | sin | 16 | NA |
| 417 | 18.66 | temperature | 25 | 4320 | < th | dose dependent | sin | 21 | NA |
| 448 | 18.68 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 449 | 18.68 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 470 | 18.68 | wind | 5 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 471 | 18.68 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 3 |
| 500 | 18.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 515 | 18.70 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 16 |
| 521 | 18.70 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 566 | 18.72 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 14 |
| 570 | 18.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 571 | 18.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 596 | 18.73 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 18 |
| 653 | 18.75 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 19 |
| 672 | 18.76 | wind | 1 | 90 | < th | dose independent | rect. | 24 | 5 |
| 729 | 18.78 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 731 | 18.78 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 11 |
| 757 | 18.79 | wind | 5 | 4320 | > th | dose dependent | sin | 13 | NA |
| 791 | 18.80 | humidity | 50 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 823 | 18.81 | wind | 5 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 834 | 18.82 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 848 | 18.82 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 8 |
| 863 | 18.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 971 | 18.86 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 2 |