Os03g0118900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0118900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.99 | 0.315 | 7.97 | 0.111 | 0.508 | 0.754 | -0.82 | 3.45 | -0.359 | 16.3 | 9.807 | 93 | -- | -- |
| 47.64 | 0.324 | 8.03 | -0.354 | 0.45 | 0.827 | -0.0782 | -- | -0.484 | 17.1 | 24.02 | 60 | -- | -- |
| 45.94 | 0.318 | 8 | -0.0343 | 0.529 | 0.808 | -- | 2.54 | -0.407 | 16.9 | 9.807 | 93 | -- | -- |
| 47.65 | 0.324 | 8.04 | -0.361 | 0.455 | 0.821 | -- | -- | -0.493 | 17.1 | 23.61 | 29 | -- | -- |
| 56.71 | 0.351 | 8 | -0.0998 | -- | 1.27 | -- | 2.82 | -0.469 | -- | -6.388 | 100 | -- | -- |
| 58.17 | 0.358 | 8.01 | -0.221 | 0.747 | -- | 0.202 | -- | -0.384 | 16.1 | -- | -- | -- | -- |
| 58.28 | 0.358 | 8.01 | -0.219 | 0.748 | -- | -- | -- | -0.383 | 16.1 | -- | -- | -- | -- |
| 55.14 | 0.346 | 8.04 | -0.418 | -- | 1.17 | -- | -- | -0.529 | -- | 24.11 | 26 | -- | -- |
| 50.78 | 0.334 | 8.02 | -- | 0.487 | 0.745 | -- | -- | -0.433 | 16.9 | 24.09 | 10 | -- | -- |
| 88.68 | 0.44 | 8.01 | -0.249 | -- | -- | -- | -- | -0.403 | -- | -- | -- | -- | -- |
| 59.54 | 0.361 | 8.01 | -- | 0.752 | -- | -- | -- | -0.359 | 16.1 | -- | -- | -- | -- |
| 59.76 | 0.36 | 8.03 | -- | -- | 1.1 | -- | -- | -0.48 | -- | 24.1 | 25 | -- | -- |
| 90.31 | 0.444 | 8 | -- | -- | -- | -- | -- | -0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 3 | 42.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 4 | 42.38 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 6 | 42.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 8 | 42.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 10 | 42.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 13 | 42.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 42 | 43.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 44 | 43.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 73 | 43.72 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 22 |
| 112 | 44.10 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 133 | 44.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 162 | 44.49 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 166 | 44.52 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 176 | 44.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 177 | 44.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 178 | 44.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 198 | 44.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 273 | 44.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 297 | 44.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 349 | 45.00 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 378 | 45.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 399 | 45.10 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 421 | 45.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 432 | 45.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 516 | 45.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 536 | 45.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 561 | 45.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 585 | 45.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 21 |
| 591 | 45.34 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 601 | 45.36 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 610 | 45.36 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 614 | 45.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 615 | 45.37 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 619 | 45.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 641 | 45.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 693 | 45.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 723 | 45.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 725 | 45.48 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 804 | 45.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 847 | 45.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 881 | 45.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 934 | 45.68 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 941 | 45.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |