BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0118900 Os03g0118900|AK073382
         (463 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00231.1  | chr4:97528-99050 FORWARD LENGTH=476                240   1e-63

>AT4G00231.1 | chr4:97528-99050 FORWARD LENGTH=476
          Length = 475

 Score =  240 bits (612), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 213/363 (58%), Gaps = 22/363 (6%)

Query: 108 EHHRAAVWDALFPGSLLELARVREKGVLDPLCMVIDTCCSXXXXXXXXXXXXXXXXXXPI 167
           E  +  VW   +P   L +A++R++   DPLCM++ TC                     I
Sbjct: 127 EKRQRDVWLRFYPERFLSIAKIRKRETFDPLCMILYTCVDGSSEIASELCSCQGLT---I 183

Query: 168 LVEIVTTAWQVGHDEE-WLEWLLFKICVEEQKFETLFVALCSRNDAEHSDGDECKTEFNA 226
           + E + T+  VG  E+ WL+ L+ +ICVE+  F  LF  L    DAE+         F++
Sbjct: 184 IAETLRTSSSVGSVEDYWLKLLVSRICVEDGYFLKLFSKL--YEDAENEI-------FSS 234

Query: 227 KHAYLLGKLSKCLANRPKEVSVSISFALDIFNAQKHAAEIVDFTCRVNSPLPTGHPAIDV 286
           + A+L+  +S     R  +VS+    A  I    + + ++ DF     S LPTG   +DV
Sbjct: 235 EQAFLVRMVSDIANERIGKVSIPKDTACSILGLFRQSVDVFDFVSGERSELPTGSTIVDV 294

Query: 287 LGYSLVLLKDICA------WESPPSDTQAPVDSLMQTGLVKHLLTYLRELEPPSMIRKSM 340
           +GYSLV+++D CA       +    D+   V+ L+ +GL++ LL  L +L+PP+ I+K++
Sbjct: 295 MGYSLVIIRDACAGGRLEELKEDNKDSGDTVELLLSSGLIELLLDLLSKLDPPTTIKKAL 354

Query: 341 ARGQGDHQPALGTAKVCPYIGYRRDVVAVIANCLHRSKKVQDEVRHLDGIILLLQQCVVD 400
            +       +L   K CPY G+RRD+V+VI NC +R K+VQDE+R  DG+ L+LQQCV D
Sbjct: 355 NQSPSSSSSSL---KPCPYRGFRRDIVSVIGNCAYRRKEVQDEIRERDGLFLMLQQCVTD 411

Query: 401 EENPYLREWGLFAVKNLLEGNEENQKEVSGLKMQEAVITPEIADIGLRVEIDKETGHPKL 460
           +ENP+LREWGL+ ++NLLEGN ENQ+ V+ L+++ +V  P++ +IGLRVEID +T  PKL
Sbjct: 412 DENPFLREWGLWCIRNLLEGNPENQEVVAELEIKGSVDVPQLREIGLRVEIDPKTARPKL 471

Query: 461 VNN 463
           VN+
Sbjct: 472 VND 474



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,528,203
Number of extensions: 331235
Number of successful extensions: 694
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,310,137
Effective search space: 2999959457
Effective search space used: 2999959457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)