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Os03g0115200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Partner of Nob1; Pno1p; Yor145cp like KH domain containing protein, transcripts identified by EST.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0287) R2 : 0.202
β1 : 1.07 (0.105) R2dD : 0.19 R2D : 0.138
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.319 (0.0612) R2dN8 : 0.0636 R2N8 : 0.0125
σ : 0.538
deviance : 132.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.12 0.484 11.2 0.636 0.367 -0.795 1.09 0.157 0.108 22.8 19.95 2864 -- --
106.08 0.48 11.2 0.666 0.371 -0.829 1.08 -- 0.114 22.8 19.8 2873 -- --
110.75 0.49 11.2 0.615 0.381 -0.786 -- 0.15 0.115 23.3 19.83 2966 -- --
110.76 0.49 11.2 0.623 0.377 -0.839 -- -- 0.111 23.3 19.9 2961 -- --
119.06 0.508 11.2 0.606 -- -0.84 -- 0.0717 0.106 -- 19.83 2771 -- --
119.09 0.512 11.2 1.11 0.379 -- 1.09 -- 0.32 22.9 -- -- -- --
123.91 0.521 11.2 1.06 0.376 -- -- -- 0.315 23.5 -- -- -- --
119.07 0.508 11.2 0.623 -- -0.843 -- -- 0.113 -- 19.84 2759 -- --
113.57 0.496 11.2 -- 0.379 -1.16 -- -- -0.0141 23.3 18.43 14567 -- --
132.78 0.538 11.2 1.07 -- -- -- -- 0.319 -- -- -- -- --
153.71 0.58 11.2 -- 0.388 -- -- -- 0.196 23.7 -- -- -- --
122.14 0.515 11.2 -- -- -1.17 -- -- -0.0146 -- 18.5 15553 -- --
163.19 0.596 11.2 -- -- -- -- -- 0.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.24 temperature 20.0 90 > th dose independent rect. 19 9
2 95.81 temperature 20.0 10 > th dose independent rect. 20 9
5 96.72 temperature 10.0 10 > th dose dependent rect. 9 20
10 97.19 temperature 10.0 270 > th dose dependent rect. 18 9
11 97.32 temperature 20.0 10 > th dose independent rect. 9 20
41 99.03 temperature 20.0 10 > th dose dependent rect. 20 9
42 99.04 temperature 20.0 270 > th dose dependent rect. 19 17
68 99.85 temperature 30.0 90 < th dose dependent rect. 15 17
131 101.16 temperature 10.0 270 > th dose dependent rect. 17 21
144 101.29 temperature 20.0 270 > th dose independent rect. 6 21
169 101.67 temperature 20.0 270 > th dose independent rect. 19 17
182 101.86 temperature 10.0 270 > th dose dependent rect. 6 21
203 102.13 radiation 1.0 30 > th dose independent rect. 12 21
245 102.61 radiation 1.0 30 > th dose independent rect. 14 19
252 102.67 temperature 10.0 43200 > th dose independent rect. 10 5
269 102.79 temperature 20.0 270 > th dose independent rect. 22 3
321 103.29 humidity 50.0 30 > th dose independent rect. 9 5
324 103.32 temperature 30.0 30 < th dose independent rect. 5 13
373 103.72 atmosphere 995.0 30 > th dose dependent rect. 12 21
377 103.76 temperature 20.0 10 > th dose independent rect. 22 16
386 103.82 temperature 25.0 270 < th dose independent rect. 14 17
410 104.03 radiation 1.0 30 > th dose independent rect. 18 15
411 104.03 humidity 50.0 30 > th dose independent rect. 14 19
429 104.17 wind 1.0 30 > th dose independent rect. 9 5
430 104.17 precipitation 0.1 30 < th dose independent rect. 14 19
431 104.17 atmosphere 1015.0 10 < th dose independent rect. 9 20
432 104.17 precipitation 0.1 30 < th dose dependent rect. 14 19
442 104.23 temperature 10.0 43200 > th dose independent rect. 9 8
445 104.26 radiation 1.0 10 > th dose independent rect. 5 4
446 104.26 temperature 10.0 10 > th dose independent rect. 9 5
448 104.26 atmosphere 995.0 10 > th dose independent rect. 9 5
449 104.26 atmosphere 1015.0 10 < th dose independent rect. 9 5
451 104.26 precipitation 0.1 10 < th dose independent rect. 9 5
461 104.26 temperature 10.0 10 > th dose independent rect. 14 19
462 104.26 precipitation 0.1 10 < th dose dependent rect. 9 5
491 104.35 atmosphere 995.0 10 > th dose independent rect. 14 19
494 104.36 temperature 10.0 1440 > th dose independent rect. 10 5
497 104.36 temperature 10.0 1440 > th dose independent rect. 15 19
515 104.45 radiation 1.0 10 < th dose independent sin 11 NA
521 104.50 radiation 1.0 30 < th dose dependent sin 11 NA
530 104.53 radiation 1.0 30 > th dose independent rect. 9 5
546 104.56 wind 9.0 30 < th dose independent rect. 9 5
547 104.56 humidity 60.0 43200 < th dose dependent rect. 2 6
552 104.57 humidity 60.0 43200 < th dose dependent rect. 23 9
559 104.59 temperature 10.0 30 > th dose dependent rect. 9 5
561 104.59 atmosphere 995.0 10 > th dose dependent rect. 14 19
567 104.64 humidity 50.0 30 > th dose independent rect. 9 3
570 104.64 atmosphere 1015.0 10 < th dose dependent rect. 9 5
574 104.66 radiation 40.0 10 < th dose independent rect. 14 19
586 104.71 temperature 10.0 43200 > th dose independent rect. 10 3
589 104.72 wind 7.0 270 < th dose independent rect. 17 10
590 104.72 temperature 20.0 4320 < th dose independent rect. 14 12
614 104.82 temperature 20.0 270 > th dose dependent sin 9 NA
617 104.83 temperature 20.0 1440 > th dose independent rect. 23 8
622 104.83 wind 9.0 10 < th dose independent rect. 9 20
627 104.85 wind 9.0 30 < th dose independent rect. 14 19
637 104.88 wind 3.0 4320 > th dose independent rect. 8 1
638 104.88 temperature 20.0 1440 > th dose independent rect. 1 3
640 104.88 precipitation 0.1 10 < th dose independent rect. 5 4
641 104.88 temperature 20.0 1440 < th dose independent rect. 23 8
644 104.88 precipitation 0.1 10 < th dose dependent rect. 5 4
648 104.91 temperature 20.0 1440 > th dose independent rect. 3 1
658 104.93 wind 9.0 10 < th dose dependent rect. 5 4
666 104.94 radiation 1.0 30 > th dose independent sin 12 NA
677 104.97 temperature 20.0 1440 < th dose independent rect. 3 1
685 105.00 temperature 20.0 1440 < th dose independent rect. 1 3
687 105.00 wind 1.0 270 > th dose independent rect. 10 22
690 105.01 wind 7.0 10 < th dose independent rect. 5 4
692 105.01 temperature 10.0 10 > th dose independent rect. 5 4
694 105.01 temperature 30.0 10 < th dose independent rect. 5 4
695 105.01 humidity 50.0 10 > th dose independent rect. 5 4
697 105.01 atmosphere 995.0 10 > th dose independent rect. 5 4
698 105.01 atmosphere 1015.0 10 < th dose independent rect. 5 4
702 105.01 temperature 10.0 10 > th dose independent rect. 9 20
704 105.01 precipitation 0.1 270 < th dose independent rect. 10 23
707 105.01 precipitation 0.1 270 < th dose dependent rect. 10 23
711 105.02 temperature 20.0 4320 > th dose independent rect. 14 12
713 105.03 temperature 20.0 1440 < th dose independent rect. 23 5
723 105.05 temperature 25.0 270 > th dose independent sin 10 NA
725 105.06 humidity 50.0 270 > th dose independent rect. 9 1
730 105.06 precipitation 0.1 270 < th dose independent rect. 3 14
731 105.06 precipitation 0.1 270 < th dose dependent rect. 3 14
738 105.08 humidity 70.0 43200 < th dose independent rect. 24 7
741 105.08 wind 9.0 30 < th dose dependent rect. 9 20
752 105.11 humidity 70.0 43200 > th dose independent rect. 23 8
754 105.11 humidity 70.0 43200 > th dose independent rect. 22 10
761 105.12 temperature 10.0 270 > th dose dependent rect. 9 1
773 105.14 atmosphere 1000.0 10 > th dose independent rect. 5 14
778 105.15 wind 1.0 14400 < th dose independent rect. 24 3
799 105.19 wind 1.0 14400 < th dose dependent rect. 21 11
808 105.21 temperature 20.0 4320 < th dose independent sin 16 NA
820 105.22 radiation 10.0 4320 > th dose dependent rect. 17 1
835 105.23 wind 3.0 4320 < th dose independent rect. 8 1
850 105.24 wind 3.0 90 < th dose dependent rect. 8 20
861 105.27 radiation 40.0 10 < th dose independent rect. 5 14
864 105.28 temperature 10.0 270 > th dose independent rect. 9 1
865 105.28 atmosphere 995.0 270 > th dose independent rect. 9 1
866 105.28 atmosphere 1015.0 270 < th dose independent rect. 9 1
873 105.28 temperature 10.0 270 > th dose independent rect. 10 23
887 105.30 precipitation 0.1 30 < th dose independent rect. 12 21
888 105.30 temperature 25.0 270 > th dose dependent rect. 9 1
891 105.30 precipitation 0.1 30 < th dose dependent rect. 12 21
898 105.32 wind 1.0 14400 < th dose dependent rect. 19 13
901 105.33 radiation 40.0 10 < th dose independent rect. 5 4
924 105.37 precipitation 0.1 270 < th dose independent rect. 9 1
929 105.37 precipitation 0.1 270 < th dose dependent rect. 9 1
931 105.38 temperature 10.0 1440 > th dose independent rect. 10 3
934 105.38 atmosphere 995.0 1440 > th dose independent rect. 10 3
938 105.38 temperature 10.0 1440 > th dose independent rect. 13 21
944 105.39 wind 9.0 270 < th dose independent rect. 9 1
945 105.39 radiation 1.0 30 > th dose independent rect. 9 3
954 105.41 precipitation 0.1 10 < th dose independent rect. 9 20
955 105.41 wind 1.0 30 > th dose independent rect. 12 21
958 105.41 precipitation 0.1 10 < th dose dependent rect. 9 20
966 105.43 humidity 90.0 4320 > th dose dependent rect. 4 3
973 105.45 temperature 10.0 30 > th dose independent rect. 9 3
975 105.45 atmosphere 995.0 30 > th dose independent rect. 9 3
976 105.45 atmosphere 1015.0 30 < th dose independent rect. 9 3
977 105.45 precipitation 0.1 30 < th dose independent rect. 9 3
978 105.45 temperature 10.0 30 > th dose independent rect. 12 21
979 105.45 precipitation 0.1 30 < th dose dependent rect. 9 3
984 105.46 wind 1.0 30 > th dose independent rect. 9 3
986 105.46 temperature 15.0 270 > th dose independent rect. 3 14
993 105.48 temperature 20.0 4320 > th dose independent sin 16 NA
997 105.48 wind 1.0 30 > th dose independent rect. 14 19