BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0115200 Os03g0115200|AK071287
         (227 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13230.1  | chr3:4270423-4271070 FORWARD LENGTH=216            304   3e-83

>AT3G13230.1 | chr3:4270423-4271070 FORWARD LENGTH=216
          Length = 215

 Score =  304 bits (778), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 145/194 (74%), Positives = 165/194 (85%)

Query: 32  KPRFEALMPSEMSGGRPQFRKVPVPQHRFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRV 91
           KP F+ L   EMS G+ QFRK+ VP +R++PLKKAW+DIYTP+Y+ MK+DIRMNLKAR+V
Sbjct: 22  KPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKAWLDIYTPIYDQMKVDIRMNLKARKV 81

Query: 92  ELKTRQDTPDVSNLQKCADFVHAFMLGFXXXXXXXXXXXXXXYVDSFEIKDVKTLRGEHL 151
           ELKTR DTPD+SNLQK ADFVHAFMLGF              YV+SFEIKDVKTL+GEHL
Sbjct: 82  ELKTRADTPDISNLQKSADFVHAFMLGFDIPDAISLLRMDELYVESFEIKDVKTLKGEHL 141

Query: 152 SRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGK 211
           SRAIGRLSGKGGKTK+AIENST+TRIVIADT+IHILG+F NIKVAR SLCSLI+GSPAGK
Sbjct: 142 SRAIGRLSGKGGKTKFAIENSTKTRIVIADTRIHILGAFSNIKVARSSLCSLIMGSPAGK 201

Query: 212 VYSKLRAVSARLAE 225
           VYSKLR+VSARL E
Sbjct: 202 VYSKLRSVSARLNE 215



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,840,117
Number of extensions: 139440
Number of successful extensions: 315
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 132
Effective length of database: 8,502,049
Effective search space: 1122270468
Effective search space used: 1122270468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)