Os03g0112400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AP2 clathrin adaptor, alpha and beta chain, appendage domain containing protein.
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Os03g0112400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AP2 clathrin adaptor, alpha and beta chain, appendage domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.24 | 0.217 | 11.3 | 0.861 | 0.498 | -0.43 | -0.25 | -0.54 | 0.316 | 6.38 | 26.6 | 100 | -- | -- |
| 21.67 | 0.217 | 11.3 | 0.777 | 0.499 | -0.397 | -0.262 | -- | 0.297 | 6.41 | 27.47 | 105 | -- | -- |
| 21.38 | 0.215 | 11.3 | 0.866 | 0.496 | -0.434 | -- | -0.601 | 0.321 | 6.4 | 26.51 | 117 | -- | -- |
| 21.89 | 0.219 | 11.3 | 0.773 | 0.488 | -0.404 | -- | -- | 0.3 | 6.16 | 28.16 | 81 | -- | -- |
| 31.76 | 0.262 | 11.3 | 0.853 | -- | -0.435 | -- | -0.628 | 0.328 | -- | 25.5 | 2869 | -- | -- |
| 24 | 0.23 | 11.3 | 0.875 | 0.443 | -- | -0.29 | -- | 0.384 | 7.08 | -- | -- | -- | -- |
| 24.22 | 0.23 | 11.3 | 0.87 | 0.442 | -- | -- | -- | 0.385 | 7.15 | -- | -- | -- | -- |
| 32.23 | 0.264 | 11.3 | 0.739 | -- | -0.336 | -- | -- | 0.323 | -- | 37.22 | 2862 | -- | -- |
| 36.14 | 0.282 | 11.3 | -- | 0.554 | -0.713 | -- | -- | 0.157 | 5.5 | 28.16 | 81 | -- | -- |
| 34.55 | 0.275 | 11.3 | 0.878 | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
| 44.17 | 0.311 | 11.3 | -- | 0.451 | -- | -- | -- | 0.288 | 7.03 | -- | -- | -- | -- |
| 35.84 | 0.279 | 11.3 | -- | -- | -0.71 | -- | -- | 0.105 | -- | 23.99 | 47520 | -- | -- |
| 54.9 | 0.346 | 11.3 | -- | -- | -- | -- | -- | 0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 4 | 20.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 16 | 20.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 37 | 20.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 83 | 21.12 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 105 | 21.23 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 128 | 21.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 132 | 21.33 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 133 | 21.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 134 | 21.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 137 | 21.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 142 | 21.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 154 | 21.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 158 | 21.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 165 | 21.41 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 183 | 21.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 185 | 21.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 188 | 21.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 190 | 21.44 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 199 | 21.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 210 | 21.46 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 213 | 21.46 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 214 | 21.46 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 224 | 21.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 225 | 21.46 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 236 | 21.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 238 | 21.48 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 252 | 21.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 262 | 21.49 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 264 | 21.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 266 | 21.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 331 | 21.53 | temperature | 30 | 10 | < th | dose dependent | sin | 7 | NA |
| 396 | 21.56 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 423 | 21.57 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 448 | 21.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 457 | 21.58 | temperature | 15 | 10 | > th | dose dependent | sin | 6 | NA |
| 488 | 21.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 497 | 21.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 644 | 21.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 694 | 21.64 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 12 |
| 696 | 21.64 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 16 |
| 698 | 21.64 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 23 |
| 768 | 21.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 826 | 21.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 836 | 21.67 | temperature | 30 | 1440 | < th | dose dependent | sin | 6 | NA |
| 861 | 21.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 878 | 21.68 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 5 |
| 882 | 21.68 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 8 |
| 937 | 21.69 | temperature | 10 | 1440 | > th | dose dependent | sin | 6 | NA |
| 940 | 21.69 | temperature | 25 | 1440 | < th | dose dependent | sin | 2 | NA |