Os03g0109700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0109700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.7 | 0.422 | 9.73 | -0.00705 | 1.46 | -1.17 | 0.812 | 14.7 | -0.862 | 8.41 | 29 | 3663 | -- | -- |
| 92.98 | 0.449 | 10 | -2.6 | 1.48 | 0.441 | 1.17 | -- | -1.18 | 8.46 | 32.74 | 18516 | -- | -- |
| 82.68 | 0.423 | 9.73 | 0.0333 | 1.46 | -1.24 | -- | 15.2 | -0.895 | 8.36 | 29.22 | 3661 | -- | -- |
| 89.28 | 0.44 | 10.1 | -2.57 | 1.48 | 0.741 | -- | -- | -1.4 | 8.31 | 31.73 | 18609 | -- | -- |
| 199.14 | 0.657 | 9.73 | 0.443 | -- | -1.54 | -- | 16.6 | -0.843 | -- | 28.9 | 3970 | -- | -- |
| 102.35 | 0.474 | 10 | -2.3 | 1.48 | -- | 0.699 | -- | -1.08 | 8.27 | -- | -- | -- | -- |
| 103.85 | 0.477 | 10 | -2.28 | 1.48 | -- | -- | -- | -1.08 | 8.24 | -- | -- | -- | -- |
| 210.84 | 0.676 | 10.1 | -2.54 | -- | 0.701 | -- | -- | -1.38 | -- | 31.74 | 18723 | -- | -- |
| 240.63 | 0.722 | 9.97 | -- | 1.47 | -0.0922 | -- | -- | -0.794 | 8.33 | 32.08 | 9982 | -- | -- |
| 224.34 | 0.7 | 10.1 | -2.27 | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
| 241.02 | 0.726 | 9.97 | -- | 1.47 | -- | -- | -- | -0.826 | 8.35 | -- | -- | -- | -- |
| 271.18 | 0.767 | 10 | -- | -- | -1.23 | -- | -- | -0.947 | -- | 35.35 | 47520 | -- | -- |
| 360.35 | 0.886 | 10 | -- | -- | -- | -- | -- | -0.812 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.72 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 80.40 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 3 | 81.15 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 4 | 81.37 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 5 | 81.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 6 | 81.41 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 8 | 81.42 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 10 | 81.46 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 12 | 81.49 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 15 | 81.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 16 | 81.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 71 | 81.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 119 | 82.24 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 293 | 82.69 | temperature | 30 | 4320 | > th | dose dependent | sin | 7 | NA |
| 406 | 82.92 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 460 | 83.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 467 | 83.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 468 | 83.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 479 | 83.08 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 481 | 83.08 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 553 | 83.20 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 555 | 83.21 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 561 | 83.22 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 564 | 83.23 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 567 | 83.23 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 574 | 83.23 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 655 | 83.36 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 924 | 83.64 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 943 | 83.69 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 947 | 83.70 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 21 |
| 954 | 83.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 14 |
| 955 | 83.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 17 |
| 960 | 83.72 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 12 |