BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0109700 Os03g0109700|AK100123
         (345 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34090.3  | chr4:16328051-16330110 REVERSE LENGTH=391          405   e-113
AT2G23370.1  | chr2:9953067-9955018 REVERSE LENGTH=341            389   e-109

>AT4G34090.3 | chr4:16328051-16330110 REVERSE LENGTH=391
          Length = 390

 Score =  405 bits (1040), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/311 (62%), Positives = 247/311 (79%), Gaps = 9/311 (2%)

Query: 43  YD-HASFIKEVAATDPPEHLSSLLNVLQARGEKLVSPGAKRGLIPLVVPLAESPAGNLTS 101
           YD H SFIK+VAAT+PP HL  LL VLQ RGE ++SPGAK+GLIPL +PL+++ +G++T+
Sbjct: 81  YDWHVSFIKDVAATEPPMHLHHLLKVLQTRGETIISPGAKQGLIPLAIPLSKNSSGSVTA 140

Query: 102 LLRWPTAPSGMEMPVVEVRNHGLWLLAKNVNQYIHRVLVEADINGYADDLWSAVGDTGKK 161
           LLRWPTAP GM+MPVVEV   G+ L+A+NV++YIHR+LVE D     + L+ A G+ G+K
Sbjct: 141 LLRWPTAPPGMDMPVVEVWRSGVRLIARNVDEYIHRILVEEDAQELTE-LYRASGEAGEK 199

Query: 162 LYTKGDFKESQMADLDAYLLKKVGLFPDVIERKTSRHFEKGDYVSALITGEFYTR-DQFP 220
           LY KG F ES++ +LD Y+LKKVGLFPD++ERK  RHF++GD+VSA++TGEFYT+ D FP
Sbjct: 200 LYEKGAFAESEIDNLDVYVLKKVGLFPDLLERKVLRHFDEGDHVSAMVTGEFYTKKDLFP 259

Query: 221 GFGRPFVFNAEIL------KRVGRTTEAKDSARVALKSPWWTLGCSYEEAAELAGWEDEQ 274
           GFGRPFV+ A IL      +RVGR  EAKD+ARVAL+SPWWTLGC YEE A +A WEDEQ
Sbjct: 260 GFGRPFVYYANILQKFILIRRVGRNVEAKDAARVALRSPWWTLGCPYEEVASIAQWEDEQ 319

Query: 275 IEFIREKVSEEGKREDLKKGKAPEQVVLDEAAFLMDLASVDGNWDDVVDRIAGCYREAGL 334
           IEFIREKVS+EG+ EDL KGKAP QV LD AAFL+DLAS++G W + ++ IA CY EAGL
Sbjct: 320 IEFIREKVSDEGRFEDLHKGKAPIQVALDVAAFLLDLASIEGTWSESLNHIAKCYEEAGL 379

Query: 335 DDIAKFIAYRE 345
             I+ F+ Y +
Sbjct: 380 HHISNFVLYTD 390



>AT2G23370.1 | chr2:9953067-9955018 REVERSE LENGTH=341
          Length = 340

 Score =  389 bits (1000), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 178/306 (58%), Positives = 237/306 (77%), Gaps = 4/306 (1%)

Query: 44  DHASFIKEVAATDPPEHLSSLLNVLQARGEKLVSPGAKRGLIPLVVPLAESPAGNLTSLL 103
           +H  FIK++A   PP+HL  LLN+  ARG+ +VSPGAK+GL+PL +PL +   G+  +LL
Sbjct: 35  EHECFIKDIAKAQPPKHLMQLLNIFTARGKSIVSPGAKQGLLPLTIPLVKMSPGSSIALL 94

Query: 104 RWPTAPSGMEMPVVEVRNHGLWLLAKNVNQYIHRVLVEADING---YADDLWSAVGDTGK 160
           RWPTAPS MEMPVVEV+ HG+W LA NV+Q+IHR+LVE D++     + ++++A G+ GK
Sbjct: 95  RWPTAPSSMEMPVVEVQKHGVWFLANNVDQFIHRILVEEDVSKPEECSQEIFNAAGEAGK 154

Query: 161 KLYTKGDFKESQMADLDAYLLKKVGLFPDVIERKTSRHFEKGDYVSALITGEFYT-RDQF 219
           KLY+KGDF  S++ DLDAYLL+KVGLFPD +ERK  RH E GD+VSAL+  EFYT R  F
Sbjct: 155 KLYSKGDFASSRLMDLDAYLLRKVGLFPDSLERKVIRHIENGDHVSALVATEFYTKRGNF 214

Query: 220 PGFGRPFVFNAEILKRVGRTTEAKDSARVALKSPWWTLGCSYEEAAELAGWEDEQIEFIR 279
           PGF RPF FNA++L ++GR  EAKD+AR ALKS WWTLGC YEE A++A W +EQI   +
Sbjct: 215 PGFARPFAFNAKVLLKLGRNLEAKDAARGALKSSWWTLGCRYEEIAQIAEWGEEQIAQYK 274

Query: 280 EKVSEEGKREDLKKGKAPEQVVLDEAAFLMDLASVDGNWDDVVDRIAGCYREAGLDDIAK 339
           E+V+ EGK+ D+ +GK   Q  LDEAAFL++LAS++G WD+ ++R+A CY+EAGL+DIAK
Sbjct: 275 ERVTGEGKQRDIDRGKPMAQASLDEAAFLLNLASLEGTWDESLERVAQCYKEAGLNDIAK 334

Query: 340 FIAYRE 345
           F+ YR+
Sbjct: 335 FVLYRD 340



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,975,675
Number of extensions: 291921
Number of successful extensions: 777
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 246
Effective length of database: 8,392,385
Effective search space: 2064526710
Effective search space used: 2064526710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)