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Os03g0102200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0158) R2 : 0.0136
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0832 (0.0332) R2dN8 : 0.0175 R2N8 : 0.0136
σ : 0.297
deviance : 40.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.52 0.237 11.1 -0.0736 0.364 0.395 -0.325 -1.14 0.12 20.6 7.44 32151 -- --
28.73 0.25 11.1 -0.0739 0.38 0.39 -0.278 -- 0.0978 20.8 9.619 32129 -- --
25.22 0.234 11.1 0.0174 0.346 0.371 -- -1.44 0.114 20.8 16.73 31948 -- --
29.01 0.251 11.1 -0.073 0.378 0.379 -- -- 0.109 20.6 9.61 32121 -- --
32.5 0.266 11.1 0.0147 -- 0.389 -- -1.55 0.111 -- 16.89 33288 -- --
32.46 0.267 11.1 0.138 0.354 -- -0.315 -- 0.102 20.8 -- -- -- --
32.79 0.268 11.1 0.149 0.355 -- -- -- 0.102 20.8 -- -- -- --
36.04 0.28 11.1 0.0418 -- 0.295 -- -- 0.152 -- 47.07 20547 -- --
29.19 0.252 11.1 -- 0.377 0.378 -- -- 0.109 20.6 9.587 32127 -- --
39.96 0.295 11.1 0.149 -- -- -- -- 0.0997 -- -- -- -- --
33.38 0.27 11.1 -- 0.355 -- -- -- 0.0858 20.8 -- -- -- --
35.95 0.279 11.1 -- -- 0.318 -- -- 0.161 -- 46.74 20412 -- --
40.55 0.297 11.1 -- -- -- -- -- 0.0832 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.67 radiation 10.0 4320 > th dose dependent rect. 16 16
2 24.72 radiation 20.0 4320 < th dose independent rect. 8 1
3 24.74 wind 1.0 14400 < th dose dependent rect. 21 5
5 24.82 radiation 20.0 43200 > th dose independent rect. 9 2
7 24.85 radiation 20.0 4320 < th dose independent rect. 15 18
9 24.86 radiation 20.0 43200 < th dose dependent rect. 8 3
11 24.90 radiation 20.0 4320 < th dose independent rect. 6 3
13 24.90 radiation 20.0 4320 < th dose independent rect. 22 11
36 25.06 wind 7.0 43200 > th dose independent rect. 10 3
37 25.06 wind 7.0 43200 < th dose independent rect. 10 3
41 25.11 wind 5.0 43200 > th dose dependent rect. 11 2
42 25.12 wind 7.0 43200 < th dose independent rect. 8 6
43 25.14 wind 7.0 43200 > th dose independent rect. 8 6
50 25.19 wind 7.0 43200 > th dose independent rect. 11 1
54 25.20 radiation 20.0 43200 < th dose independent rect. 10 1
56 25.21 wind 7.0 43200 < th dose independent rect. 11 1
59 25.22 radiation 20.0 4320 < th dose independent sin 11 NA
61 25.22 radiation 10.0 43200 > th dose independent rect. 7 2
63 25.23 wind 7.0 43200 < th dose independent rect. 4 10
65 25.23 radiation 10.0 4320 > th dose dependent rect. 6 3
80 25.24 wind 7.0 43200 > th dose independent rect. 4 10
84 25.27 atmosphere 995.0 43200 > th dose independent rect. 18 20
100 25.32 precipitation 0.1 43200 > th dose independent rect. 8 5
104 25.32 precipitation 0.1 43200 > th dose dependent rect. 8 5
107 25.33 radiation 10.0 43200 > th dose independent rect. 6 4
110 25.34 precipitation 0.1 43200 > th dose independent rect. 10 3
123 25.34 atmosphere 995.0 43200 < th dose independent rect. 18 19
125 25.34 precipitation 0.1 43200 > th dose dependent rect. 10 3
129 25.35 wind 7.0 43200 > th dose independent rect. 21 17
130 25.35 wind 7.0 43200 < th dose independent rect. 21 17
133 25.36 atmosphere 995.0 43200 < th dose independent sin 6 NA
134 25.36 humidity 70.0 43200 > th dose independent rect. 18 1
148 25.36 atmosphere 995.0 43200 < th dose independent rect. 21 18
157 25.37 precipitation 0.1 43200 < th dose independent rect. 8 5
165 25.37 radiation 30.0 4320 < th dose dependent rect. 6 3
169 25.37 precipitation 0.1 43200 < th dose dependent rect. 8 5
189 25.40 wind 1.0 43200 > th dose independent rect. 21 1
193 25.41 atmosphere 995.0 43200 > th dose independent sin 6 NA
195 25.41 precipitation 0.1 43200 < th dose independent rect. 10 3
199 25.41 precipitation 0.1 43200 < th dose dependent rect. 10 3
202 25.42 atmosphere 995.0 43200 > th dose independent rect. 21 17
218 25.43 atmosphere 995.0 43200 < th dose dependent rect. 15 19
219 25.43 atmosphere 995.0 43200 < th dose dependent rect. 10 20
230 25.44 radiation 40.0 4320 < th dose dependent rect. 21 12
249 25.45 radiation 30.0 4320 < th dose dependent rect. 24 9
286 25.47 radiation 1.0 43200 < th dose independent rect. 13 1
292 25.47 radiation 1.0 43200 < th dose dependent rect. 13 1
298 25.48 radiation 1.0 43200 > th dose independent rect. 13 1
335 25.51 humidity 90.0 43200 > th dose independent rect. 12 1
353 25.52 wind 1.0 43200 < th dose dependent rect. 21 1
357 25.53 wind 7.0 43200 < th dose independent rect. 21 2
360 25.53 temperature 20.0 14400 > th dose independent rect. 21 5
362 25.53 temperature 20.0 14400 > th dose independent rect. 19 10
373 25.54 radiation 10.0 43200 > th dose independent sin 9 NA
374 25.54 wind 1.0 43200 < th dose independent rect. 21 1
377 25.54 temperature 20.0 14400 > th dose independent rect. 20 7
383 25.55 wind 7.0 43200 > th dose independent rect. 21 2
417 25.57 temperature 20.0 14400 < th dose independent rect. 21 4
421 25.57 temperature 20.0 14400 < th dose independent rect. 19 10
428 25.58 radiation 20.0 43200 > th dose independent rect. 12 2
431 25.58 temperature 20.0 14400 < th dose independent rect. 20 7
517 25.60 atmosphere 995.0 43200 < th dose dependent rect. 21 20
521 25.60 atmosphere 995.0 43200 < th dose dependent rect. 17 23
578 25.62 wind 5.0 43200 > th dose dependent rect. 3 11
611 25.63 atmosphere 995.0 43200 < th dose dependent sin 9 NA
612 25.63 atmosphere 995.0 43200 < th dose dependent no NA NA
614 25.63 wind 5.0 43200 > th dose dependent rect. 21 2
628 25.63 wind 5.0 43200 > th dose dependent rect. 1 13
633 25.63 wind 5.0 43200 > th dose dependent rect. 21 17
665 25.65 wind 1.0 14400 < th dose independent rect. 20 6
666 25.65 wind 1.0 43200 > th dose independent rect. 16 10
672 25.65 precipitation 0.1 43200 > th dose dependent rect. 18 4
680 25.66 temperature 20.0 14400 > th dose independent rect. 23 1
681 25.66 humidity 70.0 43200 < th dose independent rect. 18 1
714 25.67 humidity 80.0 43200 > th dose dependent rect. 12 1
716 25.67 atmosphere 995.0 43200 < th dose dependent rect. 21 13
722 25.68 precipitation 0.1 43200 < th dose independent rect. 15 4
735 25.68 precipitation 0.1 43200 < th dose dependent rect. 15 4
739 25.69 wind 7.0 43200 < th dose independent sin 5 NA
741 25.69 temperature 20.0 14400 > th dose independent sin 12 NA
743 25.69 humidity 90.0 43200 < th dose independent rect. 12 1
755 25.69 wind 1.0 43200 < th dose dependent rect. 19 3
776 25.70 atmosphere 995.0 43200 < th dose dependent rect. 1 23
778 25.71 wind 7.0 43200 > th dose independent sin 5 NA
783 25.71 precipitation 0.1 43200 < th dose independent rect. 16 6
792 25.71 wind 1.0 43200 < th dose dependent rect. 6 1
793 25.71 humidity 90.0 43200 > th dose dependent rect. 10 1
795 25.71 precipitation 0.1 43200 < th dose dependent rect. 16 6
832 25.73 precipitation 0.1 43200 > th dose independent rect. 15 4
835 25.73 wind 1.0 43200 < th dose independent rect. 16 10
853 25.73 precipitation 0.1 43200 > th dose dependent rect. 14 8
858 25.74 humidity 90.0 43200 > th dose independent rect. 10 1
859 25.74 precipitation 0.1 43200 < th dose independent rect. 16 1
863 25.74 atmosphere 995.0 43200 > th dose independent rect. 4 5
866 25.74 precipitation 0.1 43200 > th dose independent rect. 16 6
885 25.74 radiation 20.0 43200 < th dose dependent rect. 13 1
886 25.74 precipitation 0.1 43200 < th dose dependent rect. 16 1
894 25.75 atmosphere 995.0 43200 > th dose independent rect. 5 3
898 25.75 atmosphere 995.0 43200 > th dose independent rect. 3 7
899 25.75 atmosphere 995.0 43200 < th dose independent rect. 1 10
909 25.75 wind 1.0 14400 < th dose dependent rect. 23 2
919 25.76 temperature 20.0 14400 < th dose independent sin 12 NA
932 25.76 atmosphere 995.0 43200 < th dose dependent rect. 4 4
947 25.77 atmosphere 995.0 43200 < th dose independent rect. 5 3
948 25.77 atmosphere 995.0 43200 < th dose independent rect. 4 5
949 25.77 atmosphere 995.0 43200 < th dose independent rect. 3 7
964 25.77 atmosphere 995.0 43200 < th dose dependent rect. 2 7